Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3471_RS04560 | Genome accession | NZ_CP162520 |
| Coordinates | 1037133..1037699 (+) | Length | 188 a.a. |
| NCBI ID | WP_003317093.1 | Uniprot ID | A0A0P9GWC5 |
| Organism | Pseudomonas syringae pv. atrofaciens strain UPB 463 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1032133..1042699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3471_RS04545 (AB3471_04540) | bfr | 1032206..1032670 (+) | 465 | WP_003317095.1 | bacterioferritin | - |
| AB3471_RS04550 (AB3471_04545) | uvrA | 1032765..1035599 (-) | 2835 | WP_003317094.1 | excinuclease ABC subunit UvrA | - |
| AB3471_RS04555 (AB3471_04550) | - | 1035729..1037123 (+) | 1395 | WP_003426593.1 | MFS transporter | - |
| AB3471_RS04560 (AB3471_04555) | ssb | 1037133..1037699 (+) | 567 | WP_003317093.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3471_RS04565 (AB3471_04560) | - | 1037828..1038940 (-) | 1113 | WP_025167988.1 | endo-1,4-beta-xylanase | - |
| AB3471_RS04570 (AB3471_04565) | - | 1038940..1039683 (-) | 744 | WP_003317091.1 | inositol monophosphatase family protein | - |
| AB3471_RS04575 (AB3471_04570) | - | 1039680..1040441 (-) | 762 | WP_004415885.1 | glycerophosphoryl diester phosphodiesterase | - |
| AB3471_RS04580 (AB3471_04575) | - | 1040448..1041554 (-) | 1107 | WP_004394159.1 | ABC transporter ATP-binding protein | - |
| AB3471_RS04585 (AB3471_04580) | - | 1041551..1042444 (-) | 894 | WP_003419594.1 | ABC transporter permease subunit | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20917.05 Da Isoelectric Point: 5.9404
>NTDB_id=1026879 AB3471_RS04560 WP_003317093.1 1037133..1037699(+) (ssb) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=1026879 AB3471_RS04560 WP_003317093.1 1037133..1037699(+) (ssb) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTACGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAGCAAGGTCAGGGCGGCGGAAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGTCCACAACAGTCAGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTTGATAGCTTTGATGATGATATTCC
GTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTACGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAGCAAGGTCAGGGCGGCGGAAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGTCCACAACAGTCAGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTTGATAGCTTTGATGATGATATTCC
GTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
47.09 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
44.92 |
99.468 |
0.447 |
| ssb | Neisseria gonorrhoeae MS11 |
44.92 |
99.468 |
0.447 |