Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB3471_RS03685 Genome accession   NZ_CP162520
Coordinates   834851..836188 (-) Length   445 a.a.
NCBI ID   WP_003344575.1    Uniprot ID   A0A3M4Y9G0
Organism   Pseudomonas syringae pv. atrofaciens strain UPB 463     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 829851..841188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3471_RS03670 (AB3471_03660) - 829973..833176 (+) 3204 WP_004415006.1 pilus assembly protein -
  AB3471_RS03675 (AB3471_03665) - 833188..833595 (+) 408 WP_004415008.1 type IV pilin protein -
  AB3471_RS03680 (AB3471_03670) thiO 833621..834724 (+) 1104 WP_004415010.1 glycine oxidase ThiO -
  AB3471_RS03685 (AB3471_03675) pilR 834851..836188 (-) 1338 WP_003344575.1 sigma-54 dependent transcriptional regulator Regulator
  AB3471_RS03690 (AB3471_03680) pilS 836191..837783 (-) 1593 WP_004415013.1 PAS domain-containing sensor histidine kinase Regulator
  AB3471_RS03695 (AB3471_03685) - 837773..838012 (-) 240 WP_032607804.1 PP0621 family protein -
  AB3471_RS03700 (AB3471_03690) - 838132..839154 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  AB3471_RS03705 (AB3471_03695) rluD 839304..840266 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB3471_RS03710 (AB3471_03700) pgeF 840263..840991 (+) 729 WP_004415016.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49669.60 Da        Isoelectric Point: 6.2986

>NTDB_id=1026874 AB3471_RS03685 WP_003344575.1 834851..836188(-) (pilR) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1026874 AB3471_RS03685 WP_003344575.1 834851..836188(-) (pilR) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGTAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATCCCGGTGAATTGCGGCGCCATCCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTACGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCAGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4Y9G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment