Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB3471_RS03690 Genome accession   NZ_CP162520
Coordinates   836191..837783 (-) Length   530 a.a.
NCBI ID   WP_004415013.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. atrofaciens strain UPB 463     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 831191..842783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3471_RS03675 (AB3471_03665) - 833188..833595 (+) 408 WP_004415008.1 type IV pilin protein -
  AB3471_RS03680 (AB3471_03670) thiO 833621..834724 (+) 1104 WP_004415010.1 glycine oxidase ThiO -
  AB3471_RS03685 (AB3471_03675) pilR 834851..836188 (-) 1338 WP_003344575.1 sigma-54 dependent transcriptional regulator Regulator
  AB3471_RS03690 (AB3471_03680) pilS 836191..837783 (-) 1593 WP_004415013.1 PAS domain-containing sensor histidine kinase Regulator
  AB3471_RS03695 (AB3471_03685) - 837773..838012 (-) 240 WP_032607804.1 PP0621 family protein -
  AB3471_RS03700 (AB3471_03690) - 838132..839154 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  AB3471_RS03705 (AB3471_03695) rluD 839304..840266 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB3471_RS03710 (AB3471_03700) pgeF 840263..840991 (+) 729 WP_004415016.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57986.92 Da        Isoelectric Point: 6.8620

>NTDB_id=1026875 AB3471_RS03690 WP_004415013.1 836191..837783(-) (pilS) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALHLLGQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSTAPN
QAIHVDISLGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1026875 AB3471_RS03690 WP_004415013.1 836191..837783(-) (pilS) [Pseudomonas syringae pv. atrofaciens strain UPB 463]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTTGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACTGACGCGATCATGCTCTCCGCGCTGTTCTATGCAGCGGGCGGGCCTTCAAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTCTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCTTTATGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCAGCGGATGTCGACAGCCTCGAGGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCATCAGGTGCTGCTGGCCAATCAGGGTGCCTTGCACCTGCTGGGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGGCGCATTGATCGGGTCATCGAAAATGTCCTGCAGCTGTCGCGCAGACGCG
AGGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGCTCCACAGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCTCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAGATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGATGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment