Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3472_RS24320 Genome accession   NZ_CP162518
Coordinates   5364020..5364535 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas lurida strain BF8PS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5359020..5369535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3472_RS24295 (AB3472_24235) - 5359262..5360371 (-) 1110 WP_098467446.1 DUF3182 family protein -
  AB3472_RS24300 (AB3472_24240) - 5360543..5361502 (-) 960 WP_069078347.1 GlxA family transcriptional regulator -
  AB3472_RS24305 (AB3472_24245) - 5361599..5362162 (+) 564 WP_034109548.1 cysteine hydrolase family protein -
  AB3472_RS24310 (AB3472_24250) tam 5362184..5362945 (-) 762 WP_122712410.1 trans-aconitate 2-methyltransferase -
  AB3472_RS24315 (AB3472_24255) - 5363046..5363966 (+) 921 WP_034109551.1 LysR family transcriptional regulator -
  AB3472_RS24320 (AB3472_24260) ssb 5364020..5364535 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  AB3472_RS24325 (AB3472_24265) - 5364545..5365939 (-) 1395 WP_034109553.1 MFS transporter -
  AB3472_RS24330 (AB3472_24270) uvrA 5366118..5368952 (+) 2835 WP_069078326.1 excinuclease ABC subunit UvrA -
  AB3472_RS24335 (AB3472_24275) bfr 5369018..5369482 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=1026827 AB3472_RS24320 WP_003232445.1 5364020..5364535(-) (ssb) [Pseudomonas lurida strain BF8PS1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1026827 AB3472_RS24320 WP_003232445.1 5364020..5364535(-) (ssb) [Pseudomonas lurida strain BF8PS1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCACCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment