Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB3X08_RS04955 Genome accession   NZ_CP162490
Coordinates   1159323..1160381 (+) Length   352 a.a.
NCBI ID   WP_369936643.1    Uniprot ID   -
Organism   Xanthomonas tesorieronis strain DAR 34887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154323..1165381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X08_RS04940 (AB3X08_04940) - 1154952..1155770 (-) 819 WP_369936640.1 DMP19 family protein -
  AB3X08_RS04945 (AB3X08_04945) - 1155827..1156474 (-) 648 WP_369936641.1 hypothetical protein -
  AB3X08_RS04950 (AB3X08_04950) - 1156676..1159105 (-) 2430 WP_369936642.1 penicillin-binding protein 1A -
  AB3X08_RS04955 (AB3X08_04955) pilM 1159323..1160381 (+) 1059 WP_369936643.1 pilus assembly protein PilM Machinery gene
  AB3X08_RS04960 (AB3X08_04960) - 1160381..1161151 (+) 771 WP_369936645.1 PilN domain-containing protein -
  AB3X08_RS04965 (AB3X08_04965) - 1161148..1161822 (+) 675 WP_369936647.1 type 4a pilus biogenesis protein PilO -
  AB3X08_RS04970 (AB3X08_04970) - 1161819..1162358 (+) 540 WP_369936648.1 pilus assembly protein PilP -
  AB3X08_RS04975 (AB3X08_04975) - 1162379..1164280 (+) 1902 WP_369936650.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37744.39 Da        Isoelectric Point: 4.4501

>NTDB_id=1026464 AB3X08_RS04955 WP_369936643.1 1159323..1160381(+) (pilM) [Xanthomonas tesorieronis strain DAR 34887]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENEMEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1026464 AB3X08_RS04955 WP_369936643.1 1159323..1160381(+) (pilM) [Xanthomonas tesorieronis strain DAR 34887]
GTGGGGCTTATTCCAAAAAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACCGCGGTCAAACTGTTGCAGCTGTC
CCGTAGCGGCAACCGGTTCCGCGTAGAGCACTACGCCGTGGAACCCTTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCCGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAGCTCGACGAGAACGAGATGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATTCCGTACCCGATCGACGAAGTGAACCTGGACTTCGAAGTGCTGGGGGTCATCCCCAACA
ACCCGGAAATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAACTGGGC
GGCCTGGTCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTCGCCAGCGAGCTGCCGGT
GGCGGCCGACGGCGTCGTCGCCCTGGTCGATATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCAGCGGACGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGGGTCGACCATATCGTGCTTGCCGGCG
GTTGCGCGGCGCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGACCGAAAGTCCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.143

99.432

0.469

Multiple sequence alignment