Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB3X07_RS05385 Genome accession   NZ_CP162488
Coordinates   1260525..1261583 (+) Length   352 a.a.
NCBI ID   WP_369943414.1    Uniprot ID   -
Organism   Xanthomonas medicagonis strain DAR 35659     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1255525..1266583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X07_RS05370 (AB3X07_05365) - 1256199..1257017 (-) 819 WP_369943411.1 DMP19 family protein -
  AB3X07_RS05375 (AB3X07_05370) - 1257073..1257720 (-) 648 WP_369943412.1 hypothetical protein -
  AB3X07_RS05380 (AB3X07_05375) - 1257877..1260306 (-) 2430 WP_369943413.1 penicillin-binding protein 1A -
  AB3X07_RS05385 (AB3X07_05380) pilM 1260525..1261583 (+) 1059 WP_369943414.1 pilus assembly protein PilM Machinery gene
  AB3X07_RS05390 (AB3X07_05385) - 1261583..1262350 (+) 768 WP_369943415.1 PilN domain-containing protein -
  AB3X07_RS05395 (AB3X07_05390) - 1262347..1263021 (+) 675 WP_369943416.1 type 4a pilus biogenesis protein PilO -
  AB3X07_RS05400 (AB3X07_05395) - 1263018..1263557 (+) 540 WP_369943417.1 pilus assembly protein PilP -
  AB3X07_RS05405 (AB3X07_05400) - 1263578..1265479 (+) 1902 WP_369943418.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37696.33 Da        Isoelectric Point: 4.4501

>NTDB_id=1026427 AB3X07_RS05385 WP_369943414.1 1260525..1261583(+) (pilM) [Xanthomonas medicagonis strain DAR 35659]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKLIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1026427 AB3X07_RS05385 WP_369943414.1 1260525..1261583(+) (pilM) [Xanthomonas medicagonis strain DAR 35659]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGCGTCGATATCAGTTCGACCGCCGTCAAGCTGTTGCAGCTGTC
GCGTAGCGGCAACCGGTTCCGCGTGGAGCACTACGCCGTGGAGCCCTTGCCGCCGAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCCGTGGGCGAAGCGATTCGCCGCGCCGTGACCCGGTCCGGCACCCGCGCCAAGCATGCGGCCGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGAACTGGACGAGAACGAGCTGGAAGCGCAGGTCGA
ACTGGAGGCGGTGAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTGATCCCCAACA
ACCCCGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTGGGT
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTCGCCAGCGAACTGCCGGT
GGCGGCCGACGGCGTCGTCGCCCTGGTCGATATCGGCGCGACCATGACCACGCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAACTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGGGTCGACCATATCGTGCTGGCCGGCG
GCTGCGCGGCGCTGGCCGGCTTGCCGGAGATGGTCGAGGAGCAACTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCACGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.143

99.432

0.469

Multiple sequence alignment