Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB3X10_RS05105 Genome accession   NZ_CP162487
Coordinates   1201171..1202229 (+) Length   352 a.a.
NCBI ID   WP_369979613.1    Uniprot ID   -
Organism   Xanthomonas bundabergensis strain DAR 80977     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196171..1207229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X10_RS05090 (AB3X10_05080) - 1196781..1197599 (-) 819 WP_369979607.1 DMP19 family protein -
  AB3X10_RS05095 (AB3X10_05085) - 1197661..1198308 (-) 648 WP_369979609.1 hypothetical protein -
  AB3X10_RS05100 (AB3X10_05090) - 1198518..1200953 (-) 2436 WP_369979611.1 penicillin-binding protein 1A -
  AB3X10_RS05105 (AB3X10_05095) pilM 1201171..1202229 (+) 1059 WP_369979613.1 pilus assembly protein PilM Machinery gene
  AB3X10_RS05110 (AB3X10_05100) - 1202229..1202996 (+) 768 WP_369979615.1 PilN domain-containing protein -
  AB3X10_RS05115 (AB3X10_05105) - 1202993..1203667 (+) 675 WP_369979617.1 type 4a pilus biogenesis protein PilO -
  AB3X10_RS05120 (AB3X10_05110) - 1203679..1204203 (+) 525 WP_369981657.1 pilus assembly protein PilP -
  AB3X10_RS05125 (AB3X10_05115) - 1204224..1206122 (+) 1899 WP_369979618.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37684.23 Da        Isoelectric Point: 4.4501

>NTDB_id=1026409 AB3X10_RS05105 WP_369979613.1 1201171..1202229(+) (pilM) [Xanthomonas bundabergensis strain DAR 80977]
MGLIPKSQQPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGSIPNNPEMVQVLLAASRSENVELRQSALELG
GLVARVMDVEAFAVENAFALVASELPVAADGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1026409 AB3X10_RS05105 WP_369979613.1 1201171..1202229(+) (pilM) [Xanthomonas bundabergensis strain DAR 80977]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGTGTCGATATCAGTTCGACCGCGGTCAAGCTGTTGCAGCTGTC
GCGTAGCGGCAATCGGTTCCGCGTAGAGCACTACGCCGTGGAACCCTTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAAGCCGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGCTCCGGCACCCGCGCCAAGCATGCCGCGGCGGCG
GTGGCCGGCTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGAGCTGGAAGCGCAGGTCGA
GCTGGAGGCGGTCAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGACTTCGAGGTGCTCGGCAGCATCCCCAACA
ACCCGGAGATGGTGCAGGTGCTGCTGGCCGCGTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGGTCGCCAGGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCGTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCGGCCGACGGCGTGGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTCAACGTGCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTCACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
TCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGGCTGCCGGAGATGGTCGAGGAACAATTGGGGGTGGCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCACGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
TCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.143

99.432

0.469

Multiple sequence alignment