Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3452_RS00650 | Genome accession | NZ_CP162478 |
| Coordinates | 116463..116966 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20816 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 93911..119116 | 116463..116966 | within | 0 |
Gene organization within MGE regions
Location: 93911..119116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3452_RS00480 (AB3452_00480) | - | 93911..94162 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| AB3452_RS00485 (AB3452_00485) | - | 94462..94725 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| AB3452_RS00490 (AB3452_00490) | - | 94863..95435 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| AB3452_RS00495 (AB3452_00495) | - | 95616..95984 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| AB3452_RS00500 (AB3452_00500) | selX | 96353..96964 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| AB3452_RS00505 (AB3452_00505) | - | 97164..97871 (+) | 708 | Protein_95 | tyrosine-type recombinase/integrase | - |
| AB3452_RS00510 (AB3452_00510) | - | 97910..98847 (+) | 938 | Protein_96 | Abi family protein | - |
| AB3452_RS00515 (AB3452_00515) | - | 99986..100171 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| AB3452_RS00520 (AB3452_00520) | - | 100173..100283 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| AB3452_RS00525 (AB3452_00525) | - | 100354..100506 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| AB3452_RS00530 (AB3452_00530) | - | 100749..100870 (-) | 122 | Protein_100 | hypothetical protein | - |
| AB3452_RS00535 (AB3452_00535) | - | 101354..102322 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| AB3452_RS00540 (AB3452_00540) | - | 102469..102552 (-) | 84 | Protein_102 | terminase small subunit | - |
| AB3452_RS00545 (AB3452_00545) | - | 102599..103168 (-) | 570 | WP_096391854.1 | terminase small subunit | - |
| AB3452_RS00550 (AB3452_00550) | - | 103165..103506 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| AB3452_RS00555 (AB3452_00555) | - | 103509..104036 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| AB3452_RS00560 (AB3452_00560) | - | 104087..104305 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| AB3452_RS00565 (AB3452_00565) | - | 104323..104901 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| AB3452_RS00570 (AB3452_00570) | - | 104913..105254 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| AB3452_RS00575 (AB3452_00575) | - | 105601..106242 (-) | 642 | WP_001019770.1 | hypothetical protein | - |
| AB3452_RS00580 (AB3452_00580) | - | 106244..106516 (-) | 273 | WP_001149387.1 | hypothetical protein | - |
| AB3452_RS00585 (AB3452_00585) | - | 106503..107306 (-) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| AB3452_RS00590 (AB3452_00590) | - | 107477..109090 (-) | 1614 | WP_033854769.1 | hypothetical protein | - |
| AB3452_RS00595 (AB3452_00595) | - | 109165..109464 (-) | 300 | WP_031904328.1 | type II toxin-antitoxin system toxin TscT | - |
| AB3452_RS00600 (AB3452_00600) | - | 109467..109676 (-) | 210 | WP_001060744.1 | type II toxin-antitoxin system antitoxin TscA | - |
| AB3452_RS00605 (AB3452_00605) | - | 109669..109815 (-) | 147 | WP_000784888.1 | hypothetical protein | - |
| AB3452_RS00610 (AB3452_00610) | - | 109827..110099 (-) | 273 | WP_000867969.1 | hypothetical protein | - |
| AB3452_RS00615 (AB3452_00615) | - | 110132..110344 (-) | 213 | WP_000608987.1 | helix-turn-helix transcriptional regulator | - |
| AB3452_RS00620 (AB3452_00620) | - | 110480..111184 (+) | 705 | WP_223200752.1 | helix-turn-helix domain-containing protein | - |
| AB3452_RS00625 (AB3452_00625) | - | 111310..111831 (+) | 522 | WP_001101554.1 | hypothetical protein | - |
| AB3452_RS00630 (AB3452_00630) | - | 112125..113342 (+) | 1218 | WP_000270122.1 | site-specific integrase | - |
| AB3452_RS00635 (AB3452_00635) | - | 113538..114710 (-) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| AB3452_RS00640 (AB3452_00640) | - | 115157..115987 (+) | 831 | Protein_122 | KilA-N domain-containing protein | - |
| AB3452_RS00645 (AB3452_00645) | rpsR | 116169..116411 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| AB3452_RS00650 (AB3452_00650) | ssbA | 116463..116966 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3452_RS00655 (AB3452_00655) | rpsF | 116987..117283 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| AB3452_RS00660 (AB3452_00660) | - | 117527..117718 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| AB3452_RS00665 (AB3452_00665) | ychF | 117804..118901 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| AB3452_RS00670 (AB3452_00670) | - | 118913..119116 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1026365 AB3452_RS00650 WP_000934799.1 116463..116966(-) (ssbA) [Staphylococcus aureus strain TUM20816]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1026365 AB3452_RS00650 WP_000934799.1 116463..116966(-) (ssbA) [Staphylococcus aureus strain TUM20816]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |