Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3444_RS13190 | Genome accession | NZ_CP162475 |
| Coordinates | 2672539..2673042 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20817 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2668476..2694190 | 2672539..2673042 | within | 0 |
Gene organization within MGE regions
Location: 2668476..2694190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3444_RS13160 (AB3444_13160) | - | 2668476..2669321 (+) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| AB3444_RS13165 (AB3444_13165) | - | 2669478..2670359 (+) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| AB3444_RS13170 (AB3444_13170) | - | 2670389..2670592 (+) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| AB3444_RS13175 (AB3444_13175) | ychF | 2670604..2671701 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| AB3444_RS13180 (AB3444_13180) | - | 2671787..2671978 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| AB3444_RS13185 (AB3444_13185) | rpsF | 2672222..2672518 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| AB3444_RS13190 (AB3444_13190) | ssbA | 2672539..2673042 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3444_RS13195 (AB3444_13195) | rpsR | 2673094..2673336 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| AB3444_RS13200 (AB3444_13200) | - | 2673518..2674348 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| AB3444_RS13205 (AB3444_13205) | - | 2674831..2676048 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| AB3444_RS13210 (AB3444_13210) | - | 2676504..2677199 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| AB3444_RS13215 (AB3444_13215) | - | 2677343..2677555 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| AB3444_RS13220 (AB3444_13220) | - | 2677556..2677828 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| AB3444_RS13225 (AB3444_13225) | - | 2677840..2677986 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| AB3444_RS13230 (AB3444_13230) | - | 2677979..2678188 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| AB3444_RS13235 (AB3444_13235) | - | 2678191..2678508 (+) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| AB3444_RS13240 (AB3444_13240) | - | 2678572..2679441 (+) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| AB3444_RS13245 (AB3444_13245) | - | 2679458..2680927 (+) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| AB3444_RS13250 (AB3444_13250) | - | 2681213..2681575 (+) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| AB3444_RS13255 (AB3444_13255) | - | 2681577..2681861 (+) | 285 | WP_000998182.1 | hypothetical protein | - |
| AB3444_RS13260 (AB3444_13260) | - | 2681858..2682499 (+) | 642 | WP_001019769.1 | hypothetical protein | - |
| AB3444_RS13265 (AB3444_13265) | - | 2682846..2683187 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| AB3444_RS13270 (AB3444_13270) | - | 2683199..2683777 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| AB3444_RS13275 (AB3444_13275) | - | 2683795..2684013 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| AB3444_RS13280 (AB3444_13280) | - | 2684064..2684591 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| AB3444_RS13285 (AB3444_13285) | - | 2684594..2684935 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| AB3444_RS13290 (AB3444_13290) | - | 2684932..2685501 (+) | 570 | WP_001293080.1 | terminase small subunit | - |
| AB3444_RS13295 (AB3444_13295) | - | 2685548..2685631 (+) | 84 | Protein_2590 | terminase small subunit | - |
| AB3444_RS13300 (AB3444_13300) | - | 2685778..2686746 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| AB3444_RS13305 (AB3444_13305) | - | 2687230..2687351 (+) | 122 | Protein_2592 | hypothetical protein | - |
| AB3444_RS13310 (AB3444_13310) | - | 2687594..2687746 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| AB3444_RS13315 (AB3444_13315) | - | 2687817..2687927 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| AB3444_RS13320 (AB3444_13320) | - | 2687929..2688114 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| AB3444_RS13325 (AB3444_13325) | - | 2689253..2690191 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| AB3444_RS13330 (AB3444_13330) | - | 2690230..2690937 (-) | 708 | Protein_2597 | tyrosine-type recombinase/integrase | - |
| AB3444_RS13335 (AB3444_13335) | selX | 2691137..2691748 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| AB3444_RS13340 (AB3444_13340) | - | 2692117..2692485 (+) | 369 | WP_108932421.1 | YxeA family protein | - |
| AB3444_RS13345 (AB3444_13345) | - | 2692666..2693238 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| AB3444_RS13350 (AB3444_13350) | - | 2693376..2693639 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| AB3444_RS13355 (AB3444_13355) | - | 2693939..2694190 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1026364 AB3444_RS13190 WP_000934799.1 2672539..2673042(+) (ssbA) [Staphylococcus aureus strain TUM20817]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1026364 AB3444_RS13190 WP_000934799.1 2672539..2673042(+) (ssbA) [Staphylococcus aureus strain TUM20817]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |