Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3432_RS13210 | Genome accession | NZ_CP162473 |
| Coordinates | 2673591..2674094 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20818 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2673591..2695242 | 2673591..2674094 | within | 0 |
Gene organization within MGE regions
Location: 2673591..2695242
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3432_RS13210 (AB3432_13210) | ssbA | 2673591..2674094 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3432_RS13215 (AB3432_13215) | rpsR | 2674146..2674388 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| AB3432_RS13220 (AB3432_13220) | - | 2674570..2675400 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| AB3432_RS13225 (AB3432_13225) | - | 2675883..2677100 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| AB3432_RS13230 (AB3432_13230) | - | 2677556..2678251 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| AB3432_RS13235 (AB3432_13235) | - | 2678395..2678607 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| AB3432_RS13240 (AB3432_13240) | - | 2678608..2678880 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| AB3432_RS13245 (AB3432_13245) | - | 2678892..2679038 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| AB3432_RS13250 (AB3432_13250) | - | 2679031..2679240 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| AB3432_RS13255 (AB3432_13255) | - | 2679243..2679560 (+) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| AB3432_RS13260 (AB3432_13260) | - | 2679624..2680493 (+) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| AB3432_RS13265 (AB3432_13265) | - | 2680510..2681979 (+) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| AB3432_RS13270 (AB3432_13270) | - | 2682265..2682627 (+) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| AB3432_RS13275 (AB3432_13275) | - | 2682629..2682913 (+) | 285 | WP_000998182.1 | hypothetical protein | - |
| AB3432_RS13280 (AB3432_13280) | - | 2682910..2683551 (+) | 642 | WP_001019769.1 | hypothetical protein | - |
| AB3432_RS13285 (AB3432_13285) | - | 2683898..2684239 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| AB3432_RS13290 (AB3432_13290) | - | 2684251..2684829 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| AB3432_RS13295 (AB3432_13295) | - | 2684847..2685065 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| AB3432_RS13300 (AB3432_13300) | - | 2685116..2685643 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| AB3432_RS13305 (AB3432_13305) | - | 2685646..2685987 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| AB3432_RS13310 (AB3432_13310) | - | 2685984..2686553 (+) | 570 | WP_001293080.1 | terminase small subunit | - |
| AB3432_RS13315 (AB3432_13315) | - | 2686600..2686683 (+) | 84 | Protein_2594 | terminase small subunit | - |
| AB3432_RS13320 (AB3432_13320) | - | 2686830..2687798 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| AB3432_RS13325 (AB3432_13325) | - | 2688282..2688403 (+) | 122 | Protein_2596 | hypothetical protein | - |
| AB3432_RS13330 (AB3432_13330) | - | 2688646..2688798 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| AB3432_RS13335 (AB3432_13335) | - | 2688869..2688979 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| AB3432_RS13340 (AB3432_13340) | - | 2688981..2689166 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| AB3432_RS13345 (AB3432_13345) | - | 2690305..2691243 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| AB3432_RS13350 (AB3432_13350) | - | 2691282..2691989 (-) | 708 | Protein_2601 | tyrosine-type recombinase/integrase | - |
| AB3432_RS13355 (AB3432_13355) | selX | 2692189..2692800 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| AB3432_RS13360 (AB3432_13360) | - | 2693169..2693537 (+) | 369 | WP_108932421.1 | YxeA family protein | - |
| AB3432_RS13365 (AB3432_13365) | - | 2693718..2694290 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| AB3432_RS13370 (AB3432_13370) | - | 2694428..2694691 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| AB3432_RS13375 (AB3432_13375) | - | 2694991..2695242 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1026320 AB3432_RS13210 WP_000934799.1 2673591..2674094(+) (ssbA) [Staphylococcus aureus strain TUM20818]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1026320 AB3432_RS13210 WP_000934799.1 2673591..2674094(+) (ssbA) [Staphylococcus aureus strain TUM20818]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |