Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3437_RS08850 | Genome accession | NZ_CP162458 |
| Coordinates | 1745964..1746467 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20914 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1724816..1750530 | 1745964..1746467 | within | 0 |
Gene organization within MGE regions
Location: 1724816..1750530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3437_RS08685 (AB3437_08675) | - | 1724816..1725067 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| AB3437_RS08690 (AB3437_08680) | - | 1725367..1725630 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| AB3437_RS08695 (AB3437_08685) | - | 1725768..1726340 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| AB3437_RS08700 (AB3437_08690) | - | 1726521..1726889 (-) | 369 | WP_108932421.1 | YxeA family protein | - |
| AB3437_RS08705 (AB3437_08695) | selX | 1727258..1727869 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| AB3437_RS08710 (AB3437_08700) | - | 1728069..1728776 (+) | 708 | Protein_1672 | tyrosine-type recombinase/integrase | - |
| AB3437_RS08715 (AB3437_08705) | - | 1728815..1729753 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| AB3437_RS08720 (AB3437_08710) | - | 1730892..1731077 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| AB3437_RS08725 (AB3437_08715) | - | 1731079..1731189 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| AB3437_RS08730 (AB3437_08720) | - | 1731260..1731412 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| AB3437_RS08735 (AB3437_08725) | - | 1731655..1731776 (-) | 122 | Protein_1677 | hypothetical protein | - |
| AB3437_RS08740 (AB3437_08730) | - | 1732260..1733228 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| AB3437_RS08745 (AB3437_08735) | - | 1733375..1733458 (-) | 84 | Protein_1679 | terminase small subunit | - |
| AB3437_RS08750 (AB3437_08740) | - | 1733505..1734074 (-) | 570 | WP_001293080.1 | terminase small subunit | - |
| AB3437_RS08755 (AB3437_08745) | - | 1734071..1734412 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| AB3437_RS08760 (AB3437_08750) | - | 1734415..1734942 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| AB3437_RS08765 (AB3437_08755) | - | 1734993..1735211 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| AB3437_RS08770 (AB3437_08760) | - | 1735229..1735807 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| AB3437_RS08775 (AB3437_08765) | - | 1735819..1736160 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| AB3437_RS08780 (AB3437_08770) | - | 1736507..1737148 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| AB3437_RS08785 (AB3437_08775) | - | 1737145..1737429 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| AB3437_RS08790 (AB3437_08780) | - | 1737431..1737793 (-) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| AB3437_RS08795 (AB3437_08785) | - | 1738079..1739548 (-) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| AB3437_RS08800 (AB3437_08790) | - | 1739565..1740434 (-) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| AB3437_RS08805 (AB3437_08795) | - | 1740498..1740815 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| AB3437_RS08810 (AB3437_08800) | - | 1740818..1741027 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| AB3437_RS08815 (AB3437_08805) | - | 1741020..1741166 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| AB3437_RS08820 (AB3437_08810) | - | 1741178..1741450 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| AB3437_RS08825 (AB3437_08815) | - | 1741451..1741663 (-) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| AB3437_RS08830 (AB3437_08820) | - | 1741807..1742502 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| AB3437_RS08835 (AB3437_08825) | - | 1742958..1744175 (+) | 1218 | WP_000270130.1 | site-specific integrase | - |
| AB3437_RS08840 (AB3437_08830) | - | 1744658..1745488 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| AB3437_RS08845 (AB3437_08835) | rpsR | 1745670..1745912 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| AB3437_RS08850 (AB3437_08840) | ssbA | 1745964..1746467 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3437_RS08855 (AB3437_08845) | rpsF | 1746488..1746784 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| AB3437_RS08860 (AB3437_08850) | - | 1747028..1747219 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| AB3437_RS08865 (AB3437_08855) | ychF | 1747305..1748402 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| AB3437_RS08870 (AB3437_08860) | - | 1748414..1748617 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| AB3437_RS08875 (AB3437_08865) | - | 1748647..1749528 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| AB3437_RS08880 (AB3437_08870) | - | 1749685..1750530 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1026006 AB3437_RS08850 WP_000934799.1 1745964..1746467(-) (ssbA) [Staphylococcus aureus strain TUM20914]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1026006 AB3437_RS08850 WP_000934799.1 1745964..1746467(-) (ssbA) [Staphylococcus aureus strain TUM20914]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |