Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3447_RS04545 | Genome accession | NZ_CP162456 |
| Coordinates | 899851..900321 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM20915 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 868122..911177 | 899851..900321 | within | 0 |
Gene organization within MGE regions
Location: 868122..911177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3447_RS04335 (AB3447_04335) | - | 868122..868679 (-) | 558 | WP_000528632.1 | PBECR4 domain-containing protein | - |
| AB3447_RS04340 (AB3447_04340) | - | 869402..870847 (-) | 1446 | WP_001148136.1 | SH3 domain-containing protein | - |
| AB3447_RS04345 (AB3447_04345) | - | 870828..871265 (-) | 438 | WP_031807125.1 | phage holin | - |
| AB3447_RS04350 (AB3447_04350) | - | 871320..871715 (-) | 396 | WP_000387943.1 | hypothetical protein | - |
| AB3447_RS04355 (AB3447_04355) | - | 871720..872958 (-) | 1239 | WP_368410596.1 | BppU family phage baseplate upper protein | - |
| AB3447_RS04360 (AB3447_04360) | - | 872971..874869 (-) | 1899 | WP_000524006.1 | N-acetylglucosaminidase | - |
| AB3447_RS04365 (AB3447_04365) | - | 875006..875305 (-) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| AB3447_RS04370 (AB3447_04370) | - | 875346..875519 (-) | 174 | WP_000782200.1 | XkdX family protein | - |
| AB3447_RS04375 (AB3447_04375) | - | 875523..875900 (-) | 378 | WP_000705911.1 | DUF2977 domain-containing protein | - |
| AB3447_RS04380 (AB3447_04380) | - | 875900..877723 (-) | 1824 | WP_368410597.1 | phage baseplate upper protein | - |
| AB3447_RS04385 (AB3447_04385) | - | 877723..879633 (-) | 1911 | WP_000369012.1 | hypothetical protein | - |
| AB3447_RS04390 (AB3447_04390) | - | 879648..881549 (-) | 1902 | WP_075111568.1 | SGNH/GDSL hydrolase family protein | - |
| AB3447_RS04395 (AB3447_04395) | - | 881558..882505 (-) | 948 | WP_000350670.1 | phage tail family protein | - |
| AB3447_RS04400 (AB3447_04400) | - | 882518..885850 (-) | 3333 | WP_368410598.1 | hypothetical protein | - |
| AB3447_RS04405 (AB3447_04405) | - | 885867..886211 (-) | 345 | WP_000105584.1 | hypothetical protein | - |
| AB3447_RS04410 (AB3447_04410) | - | 886241..886606 (-) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| AB3447_RS04415 (AB3447_04415) | - | 886668..887249 (-) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| AB3447_RS04420 (AB3447_04420) | - | 887268..887651 (-) | 384 | WP_000188649.1 | hypothetical protein | - |
| AB3447_RS04425 (AB3447_04425) | - | 887663..888010 (-) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB3447_RS04430 (AB3447_04430) | - | 888010..888312 (-) | 303 | WP_001268313.1 | hypothetical protein | - |
| AB3447_RS04435 (AB3447_04435) | - | 888309..888641 (-) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| AB3447_RS04440 (AB3447_04440) | - | 888650..888937 (-) | 288 | WP_001114085.1 | hypothetical protein | - |
| AB3447_RS04445 (AB3447_04445) | - | 888959..889933 (-) | 975 | WP_000438513.1 | phage major capsid protein | - |
| AB3447_RS04450 (AB3447_04450) | - | 889947..890567 (-) | 621 | WP_368410599.1 | DUF4355 domain-containing protein | - |
| AB3447_RS04455 (AB3447_04455) | - | 890555..890648 (-) | 94 | Protein_848 | hypothetical protein | - |
| AB3447_RS04460 (AB3447_04460) | - | 890676..890846 (-) | 171 | WP_000072202.1 | hypothetical protein | - |
| AB3447_RS04465 (AB3447_04465) | - | 890919..891914 (-) | 996 | WP_001668926.1 | minor capsid protein | - |
| AB3447_RS04470 (AB3447_04470) | - | 891921..893459 (-) | 1539 | WP_000909971.1 | phage portal protein | - |
| AB3447_RS04475 (AB3447_04475) | - | 893470..894747 (-) | 1278 | WP_000169946.1 | PBSX family phage terminase large subunit | - |
| AB3447_RS04480 (AB3447_04480) | - | 894734..895174 (-) | 441 | WP_001003271.1 | terminase small subunit | - |
| AB3447_RS04485 (AB3447_04485) | - | 895361..895783 (-) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| AB3447_RS04490 (AB3447_04490) | - | 895807..895953 (-) | 147 | WP_000989960.1 | hypothetical protein | - |
| AB3447_RS04495 (AB3447_04495) | - | 895954..896319 (-) | 366 | WP_000989954.1 | hypothetical protein | - |
| AB3447_RS04500 (AB3447_04500) | - | 896320..896616 (-) | 297 | WP_125571265.1 | DUF1024 family protein | - |
| AB3447_RS04505 (AB3447_04505) | - | 896609..896917 (-) | 309 | WP_125571267.1 | hypothetical protein | - |
| AB3447_RS04510 (AB3447_04510) | - | 896914..897261 (-) | 348 | WP_000979209.1 | YopX family protein | - |
| AB3447_RS04515 (AB3447_04515) | - | 897258..897659 (-) | 402 | WP_000695762.1 | hypothetical protein | - |
| AB3447_RS04520 (AB3447_04520) | - | 897672..897914 (-) | 243 | WP_063663525.1 | SAV1978 family virulence-associated passenger protein | - |
| AB3447_RS04525 (AB3447_04525) | - | 897918..898286 (-) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| AB3447_RS04530 (AB3447_04530) | - | 898299..898703 (-) | 405 | WP_368410600.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3447_RS04535 (AB3447_04535) | - | 898712..898930 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| AB3447_RS04540 (AB3447_04540) | - | 898937..899821 (-) | 885 | WP_000148301.1 | DnaD domain protein | - |
| AB3447_RS04545 (AB3447_04545) | ssbA | 899851..900321 (-) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3447_RS04550 (AB3447_04550) | - | 900322..900939 (-) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| AB3447_RS04555 (AB3447_04555) | - | 901020..901940 (-) | 921 | WP_000138472.1 | recombinase RecT | - |
| AB3447_RS04560 (AB3447_04560) | - | 901942..903885 (-) | 1944 | WP_000700577.1 | AAA family ATPase | - |
| AB3447_RS04565 (AB3447_04565) | - | 903894..904157 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB3447_RS04570 (AB3447_04570) | - | 904166..904426 (-) | 261 | WP_000291503.1 | DUF1108 family protein | - |
| AB3447_RS04575 (AB3447_04575) | - | 904407..904733 (-) | 327 | WP_000165362.1 | DUF2482 family protein | - |
| AB3447_RS04580 (AB3447_04580) | - | 904828..904989 (-) | 162 | WP_000066025.1 | DUF1270 domain-containing protein | - |
| AB3447_RS04585 (AB3447_04585) | - | 904982..905119 (-) | 138 | WP_000230552.1 | hypothetical protein | - |
| AB3447_RS04590 (AB3447_04590) | - | 905169..905816 (+) | 648 | WP_086153461.1 | hypothetical protein | - |
| AB3447_RS04595 (AB3447_04595) | - | 905838..905981 (-) | 144 | WP_000939498.1 | hypothetical protein | - |
| AB3447_RS04600 (AB3447_04600) | - | 905997..906749 (-) | 753 | WP_001148595.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3447_RS04605 (AB3447_04605) | - | 906751..906936 (-) | 186 | WP_000933365.1 | helix-turn-helix domain-containing protein | - |
| AB3447_RS04610 (AB3447_04610) | - | 907387..907623 (+) | 237 | WP_000856472.1 | hypothetical protein | - |
| AB3447_RS04615 (AB3447_04615) | - | 907616..907777 (-) | 162 | WP_001153175.1 | hypothetical protein | - |
| AB3447_RS04620 (AB3447_04620) | - | 907792..908046 (-) | 255 | WP_001106626.1 | helix-turn-helix domain-containing protein | - |
| AB3447_RS04625 (AB3447_04625) | - | 908236..908874 (+) | 639 | WP_000874708.1 | S24 family peptidase | - |
| AB3447_RS04630 (AB3447_04630) | - | 908906..909586 (+) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| AB3447_RS04635 (AB3447_04635) | - | 909792..911177 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=1025948 AB3447_RS04545 WP_000934770.1 899851..900321(-) (ssbA) [Staphylococcus aureus strain TUM20915]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1025948 AB3447_RS04545 WP_000934770.1 899851..900321(-) (ssbA) [Staphylococcus aureus strain TUM20915]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |