Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3426_RS14950 Genome accession   NZ_CP162433
Coordinates   2958800..2959270 (+) Length   156 a.a.
NCBI ID   WP_125571269.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2937692..2959270 2958800..2959270 within 0


Gene organization within MGE regions


Location: 2937692..2959270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3426_RS14765 (AB3426_14765) - 2937692..2938249 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  AB3426_RS14770 (AB3426_14770) - 2938984..2939349 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  AB3426_RS14775 (AB3426_14775) - 2939491..2939913 (-) 423 WP_000004981.1 HIT family protein -
  AB3426_RS14780 (AB3426_14780) - 2940047..2940787 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein -
  AB3426_RS14785 (AB3426_14785) - 2940780..2942003 (+) 1224 WP_000551836.1 ABC transporter permease -
  AB3426_RS14790 (AB3426_14790) traP 2942127..2942630 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  AB3426_RS14795 (AB3426_14795) - 2942793..2942903 (+) 111 WP_001790154.1 hypothetical protein -
  AB3426_RS14800 (AB3426_14800) hemE 2942893..2943930 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  AB3426_RS14805 (AB3426_14805) hemH 2943988..2944911 (+) 924 WP_000162881.1 ferrochelatase -
  AB3426_RS14810 (AB3426_14810) hemY 2944935..2946335 (+) 1401 WP_000167542.1 protoporphyrinogen oxidase -
  AB3426_RS14815 (AB3426_14815) - 2946658..2947212 (+) 555 WP_000132890.1 alpha/beta hydrolase -
  AB3426_RS14860 (AB3426_14860) - 2948421..2949470 (-) 1050 WP_341262137.1 site-specific integrase -
  AB3426_RS14865 (AB3426_14865) - 2949728..2950231 (-) 504 WP_000825944.1 hypothetical protein -
  AB3426_RS14870 (AB3426_14870) - 2950283..2950921 (-) 639 WP_000874710.1 XRE family transcriptional regulator -
  AB3426_RS14875 (AB3426_14875) - 2951112..2951366 (+) 255 WP_031790429.1 helix-turn-helix domain-containing protein -
  AB3426_RS14880 (AB3426_14880) - 2951382..2951585 (+) 204 WP_031905760.1 hypothetical protein -
  AB3426_RS14885 (AB3426_14885) - 2951582..2951716 (-) 135 WP_001119050.1 hypothetical protein -
  AB3426_RS14890 (AB3426_14890) - 2952159..2952344 (+) 186 WP_000933365.1 helix-turn-helix domain-containing protein -
  AB3426_RS14895 (AB3426_14895) - 2952346..2953128 (+) 783 WP_111689343.1 phage antirepressor KilAC domain-containing protein -
  AB3426_RS14900 (AB3426_14900) - 2953112..2953252 (+) 141 WP_111689342.1 hypothetical protein -
  AB3426_RS14905 (AB3426_14905) - 2953265..2953867 (-) 603 WP_033863222.1 hypothetical protein -
  AB3426_RS14910 (AB3426_14910) - 2953924..2954109 (+) 186 Protein_2902 Bro-N domain-containing protein -
  AB3426_RS14915 (AB3426_14915) - 2954219..2954428 (+) 210 WP_000455728.1 hypothetical protein -
  AB3426_RS14920 (AB3426_14920) - 2954441..2954602 (+) 162 WP_031926948.1 DUF1270 family protein -
  AB3426_RS14925 (AB3426_14925) - 2954695..2954955 (+) 261 WP_000291489.1 DUF1108 family protein -
  AB3426_RS14930 (AB3426_14930) - 2954964..2955227 (+) 264 WP_001205732.1 hypothetical protein -
  AB3426_RS14935 (AB3426_14935) - 2955236..2957179 (+) 1944 WP_031788695.1 AAA family ATPase -
  AB3426_RS14940 (AB3426_14940) - 2957181..2958101 (+) 921 WP_000138481.1 recombinase RecT -
  AB3426_RS14945 (AB3426_14945) - 2958182..2958799 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  AB3426_RS14950 (AB3426_14950) ssbA 2958800..2959270 (+) 471 WP_125571269.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17595.36 Da        Isoelectric Point: 4.9327

>NTDB_id=1025449 AB3426_RS14950 WP_125571269.1 2958800..2959270(+) (ssbA) [Staphylococcus aureus strain TUM22701]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1025449 AB3426_RS14950 WP_125571269.1 2958800..2959270(+) (ssbA) [Staphylococcus aureus strain TUM22701]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.452

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment