Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3430_RS14535 Genome accession   NZ_CP162430
Coordinates   2907913..2908383 (-) Length   156 a.a.
NCBI ID   WP_125571269.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2905039..2916071 2907913..2908383 within 0


Gene organization within MGE regions


Location: 2905039..2916071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3430_RS14500 (AB3430_14500) - 2905039..2905323 (-) 285 WP_341262139.1 hypothetical protein -
  AB3430_RS14505 (AB3430_14505) - 2905320..2905721 (-) 402 WP_000695766.1 hypothetical protein -
  AB3430_RS14510 (AB3430_14510) - 2905734..2905976 (-) 243 WP_000228426.1 phi PVL orf 51-like protein -
  AB3430_RS14515 (AB3430_14515) - 2905980..2906348 (-) 369 WP_341262138.1 SA1788 family PVL leukocidin-associated protein -
  AB3430_RS14520 (AB3430_14520) - 2906361..2906765 (-) 405 WP_000401972.1 RusA family crossover junction endodeoxyribonuclease -
  AB3430_RS14525 (AB3430_14525) - 2906774..2906992 (-) 219 WP_000338528.1 hypothetical protein -
  AB3430_RS14530 (AB3430_14530) - 2906999..2907883 (-) 885 WP_031873996.1 DnaD domain protein -
  AB3430_RS14535 (AB3430_14535) ssbA 2907913..2908383 (-) 471 WP_125571269.1 single-stranded DNA-binding protein Machinery gene
  AB3430_RS14540 (AB3430_14540) - 2908384..2909001 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  AB3430_RS14545 (AB3430_14545) - 2909082..2910002 (-) 921 WP_000138481.1 recombinase RecT -
  AB3430_RS14550 (AB3430_14550) - 2910004..2911947 (-) 1944 WP_031788695.1 AAA family ATPase -
  AB3430_RS14555 (AB3430_14555) - 2911956..2912219 (-) 264 WP_001205732.1 hypothetical protein -
  AB3430_RS14560 (AB3430_14560) - 2912228..2912488 (-) 261 WP_000291489.1 DUF1108 family protein -
  AB3430_RS14565 (AB3430_14565) - 2912581..2912742 (-) 162 WP_031926948.1 DUF1270 family protein -
  AB3430_RS14570 (AB3430_14570) - 2912755..2912964 (-) 210 WP_000455728.1 hypothetical protein -
  AB3430_RS14575 (AB3430_14575) - 2913074..2913259 (-) 186 Protein_2869 Bro-N domain-containing protein -
  AB3430_RS14580 (AB3430_14580) - 2913316..2913918 (+) 603 WP_033863222.1 hypothetical protein -
  AB3430_RS14585 (AB3430_14585) - 2913931..2914071 (-) 141 WP_111689342.1 hypothetical protein -
  AB3430_RS14590 (AB3430_14590) - 2914055..2914837 (-) 783 WP_111689343.1 phage antirepressor KilAC domain-containing protein -
  AB3430_RS14595 (AB3430_14595) - 2914839..2915024 (-) 186 WP_000933365.1 helix-turn-helix domain-containing protein -
  AB3430_RS14600 (AB3430_14600) - 2915467..2915601 (+) 135 WP_001119050.1 hypothetical protein -
  AB3430_RS14605 (AB3430_14605) - 2915598..2915801 (-) 204 WP_031905760.1 hypothetical protein -
  AB3430_RS14610 (AB3430_14610) - 2915817..2916071 (-) 255 WP_031790429.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17595.36 Da        Isoelectric Point: 4.9327

>NTDB_id=1025400 AB3430_RS14535 WP_125571269.1 2907913..2908383(-) (ssbA) [Staphylococcus aureus strain TUM22702]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1025400 AB3430_RS14535 WP_125571269.1 2907913..2908383(-) (ssbA) [Staphylococcus aureus strain TUM22702]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.452

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment