Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3445_RS08655 | Genome accession | NZ_CP162422 |
| Coordinates | 1711759..1712262 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM22723 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1709932..1742212 | 1711759..1712262 | within | 0 |
Gene organization within MGE regions
Location: 1709932..1742212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3445_RS08645 (AB3445_08650) | - | 1710261..1711199 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| AB3445_RS08650 (AB3445_08655) | rpsR | 1711465..1711707 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| AB3445_RS08655 (AB3445_08660) | ssbA | 1711759..1712262 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3445_RS08660 (AB3445_08665) | rpsF | 1712283..1712579 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| AB3445_RS08665 (AB3445_08670) | - | 1712748..1713032 (+) | 285 | WP_001553897.1 | hypothetical protein | - |
| AB3445_RS08670 (AB3445_08675) | - | 1713189..1713491 (+) | 303 | WP_001553895.1 | hypothetical protein | - |
| AB3445_RS08675 (AB3445_08680) | - | 1713534..1713869 (+) | 336 | WP_001553893.1 | DUF961 family protein | - |
| AB3445_RS08680 (AB3445_08685) | - | 1713873..1714175 (+) | 303 | WP_341270885.1 | hypothetical protein | - |
| AB3445_RS08685 (AB3445_08690) | - | 1714365..1715432 (+) | 1068 | WP_341270886.1 | replication initiation factor domain-containing protein | - |
| AB3445_RS08690 (AB3445_08695) | - | 1715518..1716579 (+) | 1062 | WP_031904062.1 | conjugal transfer protein | - |
| AB3445_RS08695 (AB3445_08700) | - | 1716584..1716844 (+) | 261 | WP_001553885.1 | TcpD family membrane protein | - |
| AB3445_RS08700 (AB3445_08705) | - | 1716850..1717239 (+) | 390 | WP_031904063.1 | TcpE family conjugal transfer membrane protein | - |
| AB3445_RS08705 (AB3445_08710) | - | 1717274..1719769 (+) | 2496 | WP_001553882.1 | ATP-binding protein | - |
| AB3445_RS08710 (AB3445_08715) | - | 1720002..1721360 (+) | 1359 | WP_001553878.1 | FtsK/SpoIIIE domain-containing protein | - |
| AB3445_RS08715 (AB3445_08720) | - | 1721367..1721534 (+) | 168 | WP_001553877.1 | hypothetical protein | - |
| AB3445_RS08720 (AB3445_08725) | - | 1721550..1723466 (+) | 1917 | WP_001553875.1 | CD3337/EF1877 family mobilome membrane protein | - |
| AB3445_RS08725 (AB3445_08730) | - | 1723456..1724493 (+) | 1038 | WP_001553872.1 | CHAP domain-containing protein | - |
| AB3445_RS08730 (AB3445_08735) | - | 1724500..1725093 (+) | 594 | WP_031904065.1 | hypothetical protein | - |
| AB3445_RS08735 (AB3445_08740) | - | 1725141..1725503 (+) | 363 | WP_031904066.1 | cystatin-like fold lipoprotein | - |
| AB3445_RS08740 (AB3445_08745) | - | 1725615..1726145 (+) | 531 | WP_108957673.1 | helix-turn-helix domain-containing protein | - |
| AB3445_RS08745 (AB3445_08750) | - | 1726126..1726599 (+) | 474 | WP_078096690.1 | IS30 family transposase | - |
| AB3445_RS08750 (AB3445_08755) | - | 1727024..1727215 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| AB3445_RS08755 (AB3445_08760) | ychF | 1727301..1728398 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| AB3445_RS08760 (AB3445_08765) | - | 1728410..1728613 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| AB3445_RS08765 (AB3445_08770) | - | 1728643..1729524 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| AB3445_RS08770 (AB3445_08775) | - | 1729681..1730526 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| AB3445_RS08775 (AB3445_08780) | - | 1731190..1732293 (+) | 1104 | Protein_1689 | PLP-dependent transferase | - |
| AB3445_RS08780 (AB3445_08785) | metC | 1732290..1733450 (+) | 1161 | WP_000175846.1 | cystathionine beta-lyase MetC | - |
| AB3445_RS08785 (AB3445_08790) | - | 1733419..1735260 (+) | 1842 | WP_000077318.1 | bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase | - |
| AB3445_RS08790 (AB3445_08795) | metE | 1735257..1737485 (+) | 2229 | WP_000207614.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| AB3445_RS08795 (AB3445_08800) | - | 1737528..1738280 (+) | 753 | WP_000195907.1 | cyclase family protein | - |
| AB3445_RS08800 (AB3445_08805) | - | 1738363..1739544 (-) | 1182 | WP_000199070.1 | acetyl-CoA C-acetyltransferase | - |
| AB3445_RS08805 (AB3445_08810) | - | 1740083..1741216 (+) | 1134 | WP_000245700.1 | low temperature requirement protein A | - |
| AB3445_RS08810 (AB3445_08815) | - | 1741583..1742212 (-) | 630 | WP_000677714.1 | ABC-2 transporter permease | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1025214 AB3445_RS08655 WP_000934799.1 1711759..1712262(-) (ssbA) [Staphylococcus aureus strain TUM22723]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1025214 AB3445_RS08655 WP_000934799.1 1711759..1712262(-) (ssbA) [Staphylococcus aureus strain TUM22723]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCCGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCCGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |