Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1F12_RS07905 Genome accession   NZ_CP162414
Coordinates   1561874..1562377 (-) Length   167 a.a.
NCBI ID   WP_368187968.1    Uniprot ID   -
Organism   Aestuariibius sp. HNIBRBA575     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1556874..1567377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F12_RS07880 (AB1F12_07880) - 1557134..1557715 (+) 582 WP_368187960.1 shikimate kinase -
  AB1F12_RS07885 (AB1F12_07885) aroB 1557712..1558836 (+) 1125 WP_368187962.1 3-dehydroquinate synthase -
  AB1F12_RS07890 (AB1F12_07890) - 1558864..1559109 (-) 246 WP_368187963.1 hypothetical protein -
  AB1F12_RS07895 (AB1F12_07895) eda 1559201..1559842 (-) 642 WP_368187965.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  AB1F12_RS07900 (AB1F12_07900) edd 1559861..1561666 (-) 1806 WP_368187967.1 phosphogluconate dehydratase -
  AB1F12_RS07905 (AB1F12_07905) ssb 1561874..1562377 (-) 504 WP_368187968.1 single-stranded DNA-binding protein Machinery gene
  AB1F12_RS07910 (AB1F12_07910) - 1562560..1563147 (+) 588 WP_368187971.1 lytic transglycosylase domain-containing protein -
  AB1F12_RS07915 (AB1F12_07915) - 1563156..1563809 (-) 654 WP_368187974.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB1F12_RS07920 (AB1F12_07920) - 1563833..1565917 (-) 2085 WP_368187975.1 dipeptide ABC transporter ATP-binding protein -
  AB1F12_RS07925 (AB1F12_07925) - 1565929..1567350 (-) 1422 WP_368187977.1 ABC transporter permease -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17554.16 Da        Isoelectric Point: 5.9220

>NTDB_id=1025091 AB1F12_RS07905 WP_368187968.1 1561874..1562377(-) (ssb) [Aestuariibius sp. HNIBRBA575]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGRDGQGGGGQSGGGGYGGGGQGGYGGGNQGGGNQGGGYGGGGSND
MDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1025091 AB1F12_RS07905 WP_368187968.1 1561874..1562377(-) (ssb) [Aestuariibius sp. HNIBRBA575]
ATGGCCGGAAGTGTGAACAAGGTAATCCTGATTGGCAATTTGGGCCGCGACCCCGAAGTGCGGACATTCCAAAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACGTCCGAAACATGGAAAGACCGCAACACCGGCGAACGCAAAGAGCGCACGGAAT
GGCATTCGGTCGCGATTTTCCAAGAGGGTCTGGTGCGCATTGCAGAGCAATATCTGCGCAAAGGGTCCAAAGTTTACATC
GAAGGTCAGCTACAGACCCGCAAATGGCAGGATCAATCCGGTGCGGATCGCTATTCCACCGAAGTTGTTTTGCAAGGCTT
TGGCGGCACGTTGACAATGCTGGACGGCCGTGATGGCCAAGGCGGCGGCGGTCAAAGTGGCGGCGGTGGCTATGGCGGCG
GCGGCCAAGGTGGCTATGGCGGTGGCAACCAGGGTGGCGGAAACCAAGGTGGCGGCTATGGCGGCGGTGGTAGCAACGAT
ATGGATGATGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.598

100

0.569
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.515
  ssb Neisseria meningitidis MC58

41.341

100

0.443
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.443

Multiple sequence alignment