Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | DQN45_RS03640 | Genome accession | NZ_LS483438 |
| Coordinates | 716389..717396 (+) | Length | 335 a.a. |
| NCBI ID | WP_005649027.1 | Uniprot ID | Q4QNM6 |
| Organism | Haemophilus influenzae strain NCTC12975 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 711389..722396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN45_RS03610 (NCTC12975_00721) | - | 711709..712062 (-) | 354 | WP_005655582.1 | helix-turn-helix domain-containing protein | - |
| DQN45_RS03615 (NCTC12975_00722) | - | 712360..713628 (+) | 1269 | WP_005689509.1 | NRAMP family divalent metal transporter | - |
| DQN45_RS03620 (NCTC12975_00723) | nudB | 713730..714185 (+) | 456 | WP_032824937.1 | dihydroneopterin triphosphate diphosphatase | - |
| DQN45_RS03625 (NCTC12975_00724) | - | 714345..715085 (+) | 741 | WP_005689504.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| DQN45_RS03630 (NCTC12975_00725) | ruvC | 715132..715704 (+) | 573 | WP_005666663.1 | crossover junction endodeoxyribonuclease RuvC | - |
| DQN45_RS03635 (NCTC12975_00726) | ruvA | 715767..716381 (+) | 615 | WP_005659994.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| DQN45_RS03640 (NCTC12975_00727) | ruvB | 716389..717396 (+) | 1008 | WP_005649027.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| DQN45_RS03645 (NCTC12975_00728) | - | 717448..717735 (-) | 288 | WP_005659998.1 | DUF5339 domain-containing protein | - |
| DQN45_RS03650 (NCTC12975_00729) | xerD | 717908..718801 (-) | 894 | WP_005668988.1 | site-specific tyrosine recombinase XerD | - |
| DQN45_RS03655 (NCTC12975_00730) | - | 718832..719998 (-) | 1167 | WP_042593509.1 | 3-phenylpropionate MFS transporter | - |
| DQN45_RS03660 (NCTC12975_00731) | proC | 719998..720813 (-) | 816 | WP_042593508.1 | pyrroline-5-carboxylate reductase | - |
| DQN45_RS03665 (NCTC12975_00732) | rdgC | 720879..721787 (+) | 909 | WP_042593507.1 | recombination-associated protein RdgC | - |
| DQN45_RS03670 (NCTC12975_00733) | ruvX | 721837..722256 (-) | 420 | WP_042593505.1 | Holliday junction resolvase RuvX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37076.41 Da Isoelectric Point: 4.7793
>NTDB_id=1024904 DQN45_RS03640 WP_005649027.1 716389..717396(+) (ruvB) [Haemophilus influenzae strain NCTC12975]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=1024904 DQN45_RS03640 WP_005649027.1 716389..717396(+) (ruvB) [Haemophilus influenzae strain NCTC12975]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGTGAGGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGAGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCAGGATTTGATTATTTGGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGAGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGAGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGTGAGGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGAGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCAGGATTTGATTATTTGGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGAGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGAGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
97.313 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
54.633 |
93.433 |
0.51 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.239 |
0.507 |