Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABW635_RS02230 Genome accession   NZ_CP162310
Coordinates   428303..429802 (+) Length   499 a.a.
NCBI ID   WP_003100862.1    Uniprot ID   A0A3L8GP27
Organism   Streptococcus iniae strain ZQ2205     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 423303..434802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW635_RS02215 (ABW635_02215) pbp3 423427..424635 (-) 1209 WP_017794608.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABW635_RS02220 (ABW635_02220) pbp3 424704..425942 (-) 1239 WP_003100860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABW635_RS02225 (ABW635_02225) amiA3 426259..428238 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  ABW635_RS02230 (ABW635_02230) amiC 428303..429802 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  ABW635_RS02235 (ABW635_02235) amiD 429802..430728 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  ABW635_RS02240 (ABW635_02240) amiE 430734..431804 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  ABW635_RS02245 (ABW635_02245) amiF 431797..432720 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  ABW635_RS02250 (ABW635_02250) - 433185..434351 (-) 1167 WP_041497833.1 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56076.58 Da        Isoelectric Point: 10.2606

>NTDB_id=1024850 ABW635_RS02230 WP_003100862.1 428303..429802(+) (amiC) [Streptococcus iniae strain ZQ2205]
MKKYIVERLFRSLISILLVTTLTYVIVFTLVPSNLIFRQDPNYNKMVTTPDKKDNYRNSVFERMGYISYYNSKELEIKAE
KIDSSVTVEPTKKNETIYKKYIASLGRGWQLKQFKESKRFYATRQIPIYERVWNFFTRLVVIDHPWKIKDSKNPNLERYV
RPEMDPAVGPALVGSGTKHKYLIYFNGQFPFVHQNIVKFDLGTSYPTYANIPVIQVITQGQGRSLSKEVKFPTGVTKSSP
IDIYSRTYKSPRLMDARDRANFGKDDAYSATRNNHAEPSMISNSFKIGIAGVLLSYLFGLPIGMLMSYYKDGLFDRFSTA
TTTFMLALPSIALVYIVRFIGSSVGLPDTFPLLGAGDPRSYVLPALILGILGTPGTVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKHHLFKQAMVPIVNGIPQAIVSTIAGATLTETVFAFPGMGKMLIDAIKVANNSMVVGLVFIFAVLSIIALLVG
DLLMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1024850 ABW635_RS02230 WP_003100862.1 428303..429802(+) (amiC) [Streptococcus iniae strain ZQ2205]
ATGAAAAAGTACATTGTTGAACGCCTGTTTAGGTCTTTGATATCAATTTTATTGGTAACGACATTGACTTATGTTATTGT
TTTTACCTTAGTACCATCTAATCTGATTTTCAGGCAAGACCCGAACTATAACAAAATGGTGACCACACCAGATAAAAAAG
ATAATTATCGCAATTCAGTTTTTGAGCGTATGGGTTATATTTCTTACTATAATAGTAAAGAACTTGAAATCAAAGCTGAA
AAAATAGATAGCAGTGTAACTGTTGAGCCAACTAAAAAGAATGAAACTATTTATAAAAAATACATTGCATCCTTAGGACG
TGGTTGGCAGTTGAAGCAGTTTAAAGAAAGCAAGCGTTTCTACGCAACGCGTCAAATTCCAATTTATGAACGTGTTTGGA
ATTTCTTTACTCGCTTAGTTGTTATCGATCATCCTTGGAAGATTAAGGATTCTAAAAATCCAAACTTAGAACGTTACGTA
CGTCCAGAAATGGATCCAGCTGTAGGACCTGCTTTAGTAGGTTCGGGAACAAAGCACAAATATCTGATTTATTTCAATGG
CCAGTTCCCATTTGTTCATCAAAATATAGTTAAATTTGATTTAGGAACATCATACCCAACTTATGCTAATATTCCTGTTA
TTCAGGTCATCACGCAAGGGCAAGGGCGTAGCCTGTCTAAAGAGGTTAAATTCCCAACAGGTGTAACAAAATCCTCACCA
ATTGACATTTACTCAAGAACTTATAAATCTCCAAGATTAATGGATGCTCGTGACCGCGCAAACTTTGGTAAAGACGATGC
TTACTCAGCAACACGCAATAACCATGCGGAGCCATCAATGATTTCTAATTCCTTTAAGATTGGTATAGCAGGTGTATTAC
TGTCATATTTATTTGGATTACCAATTGGAATGTTGATGTCTTATTATAAAGATGGTTTATTTGATCGTTTTTCTACAGCA
ACAACAACGTTTATGTTAGCTTTACCAAGTATTGCACTTGTCTATATTGTTCGTTTTATAGGTTCTAGTGTAGGATTGCC
TGATACCTTCCCATTGCTAGGTGCAGGAGATCCAAGGTCTTATGTATTACCGGCATTGATTCTAGGTATTTTAGGGACAC
CTGGAACGGTTGTGTGGTTCCGTCGTTATTTGGTTGACTTGCAAGGTAGTGATTTTGTTCGTTTTGCGCGTGCTAAAGGA
CTTACAGAGGCTGAAATTTCAAAACACCACTTGTTCAAACAAGCAATGGTGCCAATTGTTAATGGTATCCCACAAGCAAT
TGTCTCAACTATTGCTGGTGCAACCTTAACAGAAACAGTATTTGCTTTCCCAGGTATGGGGAAAATGCTTATTGATGCGA
TTAAAGTAGCCAATAACTCAATGGTCGTTGGATTAGTCTTCATTTTTGCCGTGCTTTCAATTATTGCATTGTTGGTTGGC
GATTTGCTTATGACTATTTTGGACCCACGTATTAAATTATCAAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GP27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.725

100

0.627
  amiC Streptococcus thermophilus LMD-9

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621

Multiple sequence alignment