Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABW635_RS02245 Genome accession   NZ_CP162310
Coordinates   431797..432720 (+) Length   307 a.a.
NCBI ID   WP_003100865.1    Uniprot ID   A0A1J0MXR1
Organism   Streptococcus iniae strain ZQ2205     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 432807..441076 431797..432720 flank 87
IS/Tn 433185..434366 431797..432720 flank 465


Gene organization within MGE regions


Location: 431797..441076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW635_RS02245 (ABW635_02245) amiF 431797..432720 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  ABW635_RS02250 (ABW635_02250) - 433185..434351 (-) 1167 WP_041497833.1 IS30-like element ISSag9 family transposase -
  ABW635_RS02310 (ABW635_02310) - 440762..441076 (-) 315 WP_003100867.1 DUF960 domain-containing protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34669.87 Da        Isoelectric Point: 5.9503

>NTDB_id=1024853 ABW635_RS02245 WP_003100865.1 431797..432720(+) (amiF) [Streptococcus iniae strain ZQ2205]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIVYDGKVINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKNEAERQEKIKNMMTEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKKMQKEKNLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPIHPYTKSLLSAVPIPDPILERQKKLVVYSVDQHDYSVDEPEMVEIKPGHFVWANKTEVEEYKRDL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1024853 ABW635_RS02245 WP_003100865.1 431797..432720(+) (amiF) [Streptococcus iniae strain ZQ2205]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCAAACTTCTTTATTAATAAAGGAGAAACGTTCTCTCTTGTTGGAGAATCAGGAAGTGGAAAAACCACCATTGGACGTG
CTATCATTGGCTTAAATGATACTAGTTCTGGTGAAATTGTCTATGATGGCAAGGTTATTAATGGTAAAAAAAGCAAATCA
GAAGCTAATGAATTAATTCGAAAAATTCAAATGATTTTCCAAGATCCAGCAGCAAGTTTGAATGAACGTGCTACGGTTGA
CTATATTATTTCTGAAGGTCTTTATAACTTTAATCTCTTCAAAAATGAAGCAGAGCGTCAAGAAAAGATTAAAAATATGA
TGACAGAAGTGGGATTACTGGCAGAACATTTGACACGTTATCCCCATGAATTTTCTGGAGGTCAACGTCAACGTATTGGA
ATTGCACGGGCTTTGGTCATGGATCCAGAATTTATTATTGCTGATGAGCCAATTTCTGCATTGGATGTTTCTGTACGAGC
TCAAGTTTTAAATTTGCTTAAAAAAATGCAAAAAGAGAAGAACTTGACCTATCTTTTTATTGCTCATGATTTATCAGTTG
TTCGTTTCATCTCGGATCGGATTGCTGTTATCCATAAAGGGGTTATTGTTGAGGTTGCTGAAACAGAAGAACTTTTCATT
AATCCAATCCATCCATACACCAAATCACTCCTATCTGCGGTCCCAATTCCAGATCCAATTTTGGAAAGACAAAAGAAATT
AGTGGTTTACAGTGTTGATCAACACGATTATTCCGTCGATGAACCTGAAATGGTTGAAATCAAACCAGGGCACTTTGTTT
GGGCAAATAAAACTGAAGTAGAAGAATACAAAAGAGACTTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0MXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.68

99.674

0.824
  amiF Streptococcus thermophilus LMD-9

82.353

99.674

0.821
  amiF Streptococcus salivarius strain HSISS4

81.699

99.674

0.814

Multiple sequence alignment