Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABW635_RS02235 Genome accession   NZ_CP162310
Coordinates   429802..430728 (+) Length   308 a.a.
NCBI ID   WP_003100863.1    Uniprot ID   -
Organism   Streptococcus iniae strain ZQ2205     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 424802..435728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABW635_RS02225 (ABW635_02225) amiA3 426259..428238 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  ABW635_RS02230 (ABW635_02230) amiC 428303..429802 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  ABW635_RS02235 (ABW635_02235) amiD 429802..430728 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  ABW635_RS02240 (ABW635_02240) amiE 430734..431804 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  ABW635_RS02245 (ABW635_02245) amiF 431797..432720 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  ABW635_RS02250 (ABW635_02250) - 433185..434351 (-) 1167 WP_041497833.1 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34540.45 Da        Isoelectric Point: 7.1552

>NTDB_id=1024851 ABW635_RS02235 WP_003100863.1 429802..430728(+) (amiD) [Streptococcus iniae strain ZQ2205]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFARKSTIVMLLILITIILMSFIYPMFANYDFGDVSNINDFTKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMILGVIIGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCITGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTHKIVTKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1024851 ABW635_RS02235 WP_003100863.1 429802..430728(+) (amiD) [Streptococcus iniae strain ZQ2205]
ATGGCGACAATAGACAAAAGTAAGTTCGAATTTGTTGAACTGGATTCTTATGCATCAGAAGTTATTGATGCCCCTGCTTA
CTCCTACTGGAAATCTGTTTTTAGACAATTTTTTGCGCGGAAATCTACTATAGTAATGTTGCTTATTTTGATTACTATTA
TTTTAATGAGCTTTATTTACCCAATGTTTGCCAACTATGATTTTGGTGATGTTAGCAATATCAATGATTTTACCAAGCGC
TACATTTCTCCAAATGGGGAATATTGGTTTGGTACAGATAAAAACGGGCAGTCGCTTTTTGATGGGGTTTGGTATGGTGC
TAGAAACTCAATCTTAATTTCTGTCATTGCAACAATGATTAACATGATTTTGGGTGTAATCATTGGAGGACTTTGGGGTG
TTTCTAAAGCTGTTGATAAAGTAATGATTGAAGTTTACAATGTCATTTCCAATCTGCCACAAATGCTGATTATCATTGTT
TTGACTTACTCCATTGGTGCAGGTTTCTGGAACTTGATTTTTGCTTTTTGTATTACAGGATGGATTGGTATTGCTTACGC
GGTTCGTGTCCAAGTGTTACGTTACCGTGATTTGGAATATAATTTAGCTAGTCAAACACTGGGAACGCCAACACATAAAA
TTGTAACAAAAAACCTTTTACCACAATTGGTTTCAGTTATTGTGTCAATGGTTTCCTTGTTACTTCCAGCCTATATTTCT
TCAGAAGCGTTTCTATCCTTCTTTGGATTAGGCTTACCGCTATCAGAGCCAAGTTTAGGTCGTTTAATTTCAAACTATTC
CTCTAATTTAACAACAAATGCCTATCTTTTCTGGATTCCATTAACCACTCTTATCTTAGTATCTCTTCCACTCTATATTG
TGGGCCAAAATTTGGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724

Multiple sequence alignment