Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AB1F57_RS06360 Genome accession   NZ_CP162268
Coordinates   1255103..1255906 (+) Length   267 a.a.
NCBI ID   WP_170238891.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250103..1260906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS06335 (AB1F57_06335) - 1250241..1250939 (-) 699 WP_167785293.1 amino acid ABC transporter permease -
  AB1F57_RS06340 (AB1F57_06340) - 1251249..1252088 (-) 840 WP_167785294.1 transporter substrate-binding domain-containing protein -
  AB1F57_RS06345 (AB1F57_06345) - 1252098..1252859 (-) 762 WP_105110792.1 amino acid ABC transporter ATP-binding protein -
  AB1F57_RS06350 (AB1F57_06350) micA 1253051..1253755 (+) 705 WP_105110793.1 response regulator YycF Regulator
  AB1F57_RS06355 (AB1F57_06355) micB 1253748..1255097 (+) 1350 WP_105110794.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AB1F57_RS06360 (AB1F57_06360) vicX 1255103..1255906 (+) 804 WP_170238891.1 MBL fold metallo-hydrolase Regulator
  AB1F57_RS06365 (AB1F57_06365) pbp2b 1256244..1258319 (+) 2076 WP_367986301.1 penicillin-binding protein PBP2B -
  AB1F57_RS06370 (AB1F57_06370) recR 1258328..1258924 (+) 597 WP_105110797.1 recombination mediator RecR -
  AB1F57_RS06375 (AB1F57_06375) - 1259171..1260217 (+) 1047 WP_172068144.1 D-alanine--D-alanine ligase -
  AB1F57_RS06380 (AB1F57_06380) - 1260310..1260690 (+) 381 WP_174852642.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29536.57 Da        Isoelectric Point: 5.9798

>NTDB_id=1024696 AB1F57_RS06360 WP_170238891.1 1255103..1255906(+) (vicX) [Streptococcus sp. ZY1909104]
MTEVSFKYSILASGSSGNCFYLETPKKRILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANEQTWQAMDSKLGKIAIAQKHIFELGVTKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVILTDTGYVSDRMAGIV
ANADGYLIESNHDIEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLVSI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1024696 AB1F57_RS06360 WP_170238891.1 1255103..1255906(+) (vicX) [Streptococcus sp. ZY1909104]
ATGACGGAAGTAAGTTTTAAATATAGTATTTTGGCGTCTGGCTCCAGCGGCAATTGTTTTTATTTGGAGACGCCTAAGAA
ACGAATTTTGGTGGATGCGGGGCTCTCTGGTAAGAAAATTACCAGTCTCTTGGCGGAAATCGACCGCAAGCCAGATGATA
TTGATGCCATTTTGGTGACCCATGAGCACAGTGACCATATCCATGGAATCGGTGTTCTGGCCCGCAAATACGGTATGGAC
ATTTATGCCAATGAGCAGACCTGGCAGGCCATGGACAGCAAGTTGGGCAAGATTGCTATAGCACAAAAGCATATTTTTGA
GCTGGGGGTAACCAAGACCTTTGGTGACCTGGATATTGAGTCCTTCGGTGTTAGCCACGATGCGGCCTGTCCGCAGTTTT
ACCGTTTTATGAAGGATGATAAATCCTTTGTTATACTGACGGATACGGGTTATGTCAGCGACCGGATGGCTGGGATTGTG
GCCAATGCAGATGGCTATTTGATTGAGTCCAATCATGATATTGAAATCCTGCGTGCAGGTTCTTATTCGTGGAATTTGAA
ACAGCGGATTTTGTCGGATAAGGGGCATCTCTGCAATGAAGATGGAGCAGATGCCATGATTCGGACCCTGGGTAATCGGA
CTAAGAAAATCTATCTTGGTCACTTGTCCAAGGAAAACAATATTAAAGAACTGGCCCACATGACCATGGTCAATCAGCTG
GCCCAGGCTGATTTGGGAGTAGGAGTGGATTTCCAAGTCTACGATACATCGCCCGATACGGCGACACCGCTGGTCTCCAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

79.026

100

0.79

Multiple sequence alignment