Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   AB1F57_RS06355 Genome accession   NZ_CP162268
Coordinates   1253748..1255097 (+) Length   449 a.a.
NCBI ID   WP_105110794.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248748..1260097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS06330 (AB1F57_06330) - 1249570..1250229 (-) 660 WP_105110789.1 amino acid ABC transporter permease -
  AB1F57_RS06335 (AB1F57_06335) - 1250241..1250939 (-) 699 WP_167785293.1 amino acid ABC transporter permease -
  AB1F57_RS06340 (AB1F57_06340) - 1251249..1252088 (-) 840 WP_167785294.1 transporter substrate-binding domain-containing protein -
  AB1F57_RS06345 (AB1F57_06345) - 1252098..1252859 (-) 762 WP_105110792.1 amino acid ABC transporter ATP-binding protein -
  AB1F57_RS06350 (AB1F57_06350) micA 1253051..1253755 (+) 705 WP_105110793.1 response regulator YycF Regulator
  AB1F57_RS06355 (AB1F57_06355) micB 1253748..1255097 (+) 1350 WP_105110794.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AB1F57_RS06360 (AB1F57_06360) vicX 1255103..1255906 (+) 804 WP_170238891.1 MBL fold metallo-hydrolase Regulator
  AB1F57_RS06365 (AB1F57_06365) pbp2b 1256244..1258319 (+) 2076 WP_367986301.1 penicillin-binding protein PBP2B -
  AB1F57_RS06370 (AB1F57_06370) recR 1258328..1258924 (+) 597 WP_105110797.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51206.31 Da        Isoelectric Point: 4.4740

>NTDB_id=1024695 AB1F57_RS06355 WP_105110794.1 1253748..1255097(+) (micB) [Streptococcus sp. ZY1909104]
MINQLRYLITTSEFWFIVISIGFVIAITVLLIENYRDNKQIKQLNERVKSLMEGDYADVLDLRGSPEITDMTNSLNDLSE
MIRLTHDNLEQEKTRLSSILSYMSDGVVATDRMGRIIMINDMAQKQLGLSVQEATQSDILDVLDLQEEYSFRELLAQTPE
IVLEHTNENQEFLTLRANFATIRSESGLISGLVIVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGAIT
ETVAPSFVKVSLDETNRMMRMITDLLSLSRFDNQVGELNLELINFTAFVTFILNRFDQMKNSDSEKIYSIVRDYQISPIW
IEIDTDKMTQVLDNILNNAIKYSPDGGKITFSMKTTDSQLIVSISDQGLGIPKADLPKIFDRFYRVDKARSRSQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKEIAMDEWDDTLEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1024695 AB1F57_RS06355 WP_105110794.1 1253748..1255097(+) (micB) [Streptococcus sp. ZY1909104]
ATGATTAATCAACTGCGTTACCTGATAACGACCTCGGAATTCTGGTTTATTGTCATCAGTATTGGCTTTGTGATTGCCAT
TACTGTTCTCTTGATTGAGAATTACCGGGACAATAAGCAGATTAAACAATTAAATGAACGTGTTAAGTCGCTCATGGAAG
GAGATTATGCGGATGTTCTGGATCTAAGAGGTAGTCCGGAAATTACGGATATGACCAACTCCTTGAACGATTTGTCTGAA
ATGATTCGCCTGACGCATGATAATTTGGAACAGGAAAAAACACGCCTCAGTTCCATTTTGTCTTATATGAGTGATGGTGT
TGTGGCAACCGATCGAATGGGGCGCATCATTATGATTAACGACATGGCCCAGAAACAATTAGGTCTGAGCGTACAGGAGG
CGACGCAATCAGATATCTTGGATGTTTTGGACCTCCAGGAGGAATACAGTTTTCGTGAATTGCTGGCTCAGACACCGGAA
ATTGTGCTTGAGCACACCAATGAAAACCAGGAATTTCTGACACTTCGGGCAAATTTTGCGACCATTCGGAGCGAAAGTGG
CTTGATTTCTGGTCTGGTTATTGTCCTGCATGATATGACTGAGCAGGCCAAGGAAGAGCGGGAGCGGCGGCTCTTTGTAT
CTAATGTTAGCCACGAGTTGCGGACACCTCTAACATCTGTCAAGTCTTATCTAGAAGCCTTGGACGAGGGTGCTATTACA
GAAACGGTGGCTCCAAGCTTTGTCAAGGTTTCTCTAGATGAGACCAACCGCATGATGAGGATGATTACGGATCTCCTGAG
CCTGTCACGTTTTGACAATCAAGTCGGTGAGTTGAATCTAGAATTGATTAACTTCACGGCCTTTGTCACCTTTATTCTCA
ACCGTTTTGATCAGATGAAGAATTCAGATTCTGAGAAGATTTATTCGATTGTGCGAGACTATCAGATTAGTCCGATTTGG
ATAGAAATTGATACGGACAAGATGACCCAGGTTTTGGACAATATCCTGAATAATGCAATCAAGTATTCGCCGGATGGGGG
CAAAATCACTTTCAGTATGAAGACCACGGACAGTCAGCTGATTGTCTCCATCTCTGACCAAGGGCTGGGAATTCCCAAGG
CTGATTTGCCTAAGATTTTTGACCGATTTTACCGGGTGGACAAGGCACGTTCGCGGTCCCAAGGGGGTACAGGTCTGGGC
TTGGCCATTGCCAAGGAAATTGTGAAACAGCATAAAGGTTTTATTTGGGCCAAGTCAGAATATGGACATGGTTCGACCTT
TACTATTGTCTTGCCATACAGTAAGGAAATTGCTATGGATGAGTGGGATGACACTCTTGAGGAAGAATAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(95-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.266

97.105

0.673
  vicK Streptococcus mutans UA159

69.479

89.755

0.624

Multiple sequence alignment