Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   AB1F57_RS00360 Genome accession   NZ_CP162268
Coordinates   58118..59026 (+) Length   302 a.a.
NCBI ID   WP_170238944.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 53118..64026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS00335 (AB1F57_00335) - 54390..54560 (+) 171 WP_172074598.1 hypothetical protein -
  AB1F57_RS00340 (AB1F57_00340) - 54735..55583 (-) 849 WP_367985886.1 cysteine ABC transporter substrate-binding protein -
  AB1F57_RS00345 (AB1F57_00345) - 55602..56261 (-) 660 Protein_49 amino acid ABC transporter ATP-binding protein -
  AB1F57_RS00350 (AB1F57_00350) ruvB 56365..57366 (+) 1002 WP_167785838.1 Holliday junction branch migration DNA helicase RuvB -
  AB1F57_RS00355 (AB1F57_00355) - 57390..57998 (+) 609 WP_170238945.1 HAD-IA family hydrolase -
  AB1F57_RS00360 (AB1F57_00360) comR 58118..59026 (+) 909 WP_170238944.1 helix-turn-helix domain-containing protein Regulator
  AB1F57_RS00365 (AB1F57_00365) - 59291..60526 (+) 1236 WP_367985887.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB1F57_RS00370 (AB1F57_00370) - 60562..60786 (+) 225 WP_167785834.1 hypothetical protein -
  AB1F57_RS00375 (AB1F57_00375) - 60839..62389 (+) 1551 WP_174852974.1 quinol oxidase -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35768.73 Da        Isoelectric Point: 4.5714

>NTDB_id=1024673 AB1F57_RS00360 WP_170238944.1 58118..59026(+) (comR) [Streptococcus sp. ZY1909104]
MNDKEFGQRIRQLREQINLTREQFCGDEVELSVRQLIRIETGSSKPTLSKIQYIATRLGMTLYELMPDYVKLPDRYSKLK
FEVLRTPTYENTDLIEKRNRLMEEIYDDYYDDLPEEEQIAIDAFQSFVDIYETKSVHFGKAILDDYFEQVHRKDKFTVND
LLVVRLYLEHLQDEDMTSPRFQHFLDITQHFPVQVEAIDSNELFILRDVMLASIGILGTKECYDYIPPIFDTLDQIMVQT
HDFQKKPILNLLKWKYVLYTNSDREEAQKLYEEAVMFAKLIGDDHLVAKLEESWKGDSTGKV

Nucleotide


Download         Length: 909 bp        

>NTDB_id=1024673 AB1F57_RS00360 WP_170238944.1 58118..59026(+) (comR) [Streptococcus sp. ZY1909104]
ATGAACGATAAGGAATTTGGGCAACGTATTCGCCAGCTGAGAGAGCAGATTAATTTGACGCGCGAACAGTTTTGTGGTGA
TGAGGTTGAACTTTCAGTCCGGCAATTGATTCGGATTGAGACTGGCAGCTCAAAACCCACGTTGTCTAAAATCCAGTACA
TTGCCACACGTTTGGGAATGACCTTGTATGAATTGATGCCAGACTATGTTAAGCTCCCAGATAGATACTCGAAATTAAAG
TTTGAGGTTCTCCGCACACCGACCTATGAAAATACGGACTTGATAGAAAAACGCAATCGTCTGATGGAAGAAATTTATGA
CGACTATTACGACGACCTGCCAGAGGAAGAGCAGATAGCAATTGATGCTTTTCAGTCTTTTGTTGACATATATGAAACAA
AGTCTGTCCATTTTGGGAAAGCTATCTTAGATGATTATTTCGAGCAGGTTCATCGTAAAGATAAATTTACTGTCAATGAT
TTATTGGTTGTGCGGCTATATTTGGAGCATTTACAGGATGAGGACATGACCTCGCCAAGATTTCAACATTTTTTAGATAT
TACCCAGCATTTTCCGGTACAGGTGGAAGCTATAGATTCAAATGAGCTATTTATTTTGCGTGATGTGATGCTAGCTTCTA
TTGGTATCCTTGGGACTAAGGAGTGTTATGACTATATTCCGCCTATTTTTGATACTCTAGACCAGATAATGGTCCAGACG
CACGATTTCCAAAAGAAACCGATTCTGAATCTATTAAAGTGGAAATACGTACTATATACCAACAGTGACCGTGAAGAGGC
ACAAAAATTGTACGAAGAGGCTGTTATGTTTGCGAAATTAATAGGTGATGATCATTTGGTGGCTAAACTAGAAGAATCAT
GGAAAGGGGATTCCACTGGAAAAGTGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_19)

(7-68)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

62.416

98.675

0.616
  comR Streptococcus suis 05ZYH33

62.416

98.675

0.616
  comR Streptococcus suis D9

55.629

100

0.556
  comR Streptococcus mutans UA159

42.617

98.675

0.421
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

40

96.026

0.384

Multiple sequence alignment