Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   DQN79_RS09300 Genome accession   NZ_LS483435
Coordinates   1830538..1831569 (+) Length   343 a.a.
NCBI ID   WP_003771353.1    Uniprot ID   D4DPU9
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825538..1836569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS09265 (NCTC11050_01779) - 1825976..1826263 (+) 288 WP_041961425.1 hypothetical protein -
  DQN79_RS09270 (NCTC11050_01780) - 1826324..1827331 (-) 1008 WP_041961426.1 asparaginase -
  DQN79_RS09275 (NCTC11050_01781) - 1827422..1828342 (+) 921 WP_040665767.1 pseudouridine synthase -
  DQN79_RS09280 (NCTC11050_01782) tadA 1828463..1829203 (+) 741 WP_003771361.1 tRNA adenosine(34) deaminase TadA -
  DQN79_RS09285 (NCTC11050_01783) - 1829200..1829439 (+) 240 WP_003771360.1 DUF333 domain-containing protein -
  DQN79_RS09290 (NCTC11050_01784) - 1829509..1829946 (-) 438 WP_003771357.1 META domain-containing protein -
  DQN79_RS09295 (NCTC11050_01785) - 1830029..1830367 (-) 339 WP_003771355.1 DUF4298 domain-containing protein -
  DQN79_RS09300 (NCTC11050_01786) ruvB 1830538..1831569 (+) 1032 WP_003771353.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DQN79_RS09305 (NCTC11050_01787) - 1831596..1832258 (+) 663 WP_003771348.1 hypothetical protein -
  DQN79_RS09310 (NCTC11050_01788) prfA 1832352..1833428 (+) 1077 WP_003771346.1 peptide chain release factor 1 -
  DQN79_RS09315 (NCTC11050_01789) - 1833536..1833934 (+) 399 WP_003771344.1 hypothetical protein -
  DQN79_RS09320 (NCTC11050_01790) comA 1834028..1836283 (+) 2256 WP_041961427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37660.32 Da        Isoelectric Point: 5.8573

>NTDB_id=1024652 DQN79_RS09300 WP_003771353.1 1830538..1831569(+) (ruvB) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MLHTDNLTAAKPERIISAQSLSSQEEQLERALRPKLLADYIGQHKAKEQLEIFIQAAKKRGEALDHTLLFGPPGLGKTTL
ANIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDYQLDIMIGEGPAARSVKID
LPPFTLVGATTRAGMLTNPLRDRFGIVARLEFYNHADLATIVRRSAHLLQLDMDESGAMEVAKRSRGTPRIANRLLRRVR
DYAEVKGDGSISAKTADAALSMLDVDAVGLDVMDRKFLEAVLHKFGGGPVGLENIAAAIGESPDTIEDVIEPYLIQQGFL
QRTPRGRMATEISYLHFGLPVEK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1024652 DQN79_RS09300 WP_003771353.1 1830538..1831569(+) (ruvB) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGCTGCACACCGACAACCTCACCGCCGCCAAGCCGGAACGCATTATCAGCGCGCAATCCCTGTCATCCCAAGAAGAACA
GCTCGAACGCGCGCTGCGCCCGAAGCTGCTGGCCGACTACATCGGCCAGCACAAGGCCAAAGAACAACTTGAAATCTTTA
TCCAGGCAGCCAAAAAACGCGGTGAGGCACTCGACCACACGCTGCTTTTCGGCCCGCCGGGCTTGGGCAAAACCACGTTG
GCCAACATCATTGCCAAAGAATTGGGCGTAAACCTGCGCCAAACCAGCGGTCCGGTGCTGGAACGCGCGGGCGATTTGGC
CGCGCTCCTGACCAACCTCGAACCGCACGACGTATTGTTCATCGACGAAATCCACCGCCTCAGCCCTGTGGTGGAGGAAA
TCCTGTATCCCGCTTTGGAAGACTACCAGCTCGACATCATGATAGGCGAAGGCCCGGCCGCCCGCTCGGTGAAAATCGAC
CTGCCGCCGTTCACGCTGGTCGGCGCGACCACCCGTGCGGGTATGCTGACCAATCCGTTGCGCGACCGTTTCGGCATCGT
CGCTCGTTTGGAGTTTTACAACCATGCCGATTTGGCCACCATCGTCCGCCGCTCGGCGCATCTTTTACAGCTGGACATGG
ACGAATCGGGCGCGATGGAAGTGGCCAAACGCAGCAGGGGCACGCCGCGCATCGCCAACCGCCTGCTGCGCCGCGTGCGC
GATTACGCCGAAGTGAAGGGCGACGGCAGCATCAGCGCGAAAACCGCCGATGCCGCGCTGTCGATGCTGGATGTGGACGC
GGTCGGCTTAGACGTGATGGACAGGAAGTTCCTCGAAGCCGTGCTGCACAAGTTCGGCGGCGGGCCGGTCGGCTTGGAAA
ACATCGCCGCCGCCATCGGCGAATCCCCCGACACCATCGAAGACGTTATCGAACCTTACCTGATTCAGCAGGGTTTCCTG
CAACGCACGCCGCGCGGCCGCATGGCCACCGAAATCAGCTACCTGCATTTCGGCCTGCCGGTAGAGAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-337)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(32-190)

RuvB AAA lid domain (AAA_lid_4)

(193-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DPU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.468

95.335

0.586
  ruvB Streptococcus pneumoniae TIGR4

60

93.294

0.56
  ruvB Streptococcus pneumoniae R6

60

93.294

0.56
  ruvB Streptococcus pneumoniae D39

60

93.294

0.56
  ruvB Synechocystis sp. PCC 6803

54.878

95.627

0.525
  ruvB Helicobacter pylori 26695

54.711

95.918

0.525