Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQN32_RS05920 Genome accession   NZ_LS483432
Coordinates   1141063..1142025 (-) Length   320 a.a.
NCBI ID   WP_031488550.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136063..1147025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN32_RS05905 (NCTC13745_01179) - 1136900..1137607 (-) 708 WP_002984000.1 O-methyltransferase -
  DQN32_RS05910 (NCTC13745_01180) - 1137673..1138869 (-) 1197 WP_002995765.1 OFA family MFS transporter -
  DQN32_RS05915 (NCTC13745_01181) pepF 1139245..1141050 (-) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  DQN32_RS05920 (NCTC13745_01182) coiA 1141063..1142025 (-) 963 WP_031488550.1 competence protein CoiA Machinery gene
  DQN32_RS05925 (NCTC13745_01183) - 1142321..1143037 (-) 717 WP_002995774.1 pseudouridine synthase -
  DQN32_RS05930 (NCTC13745_01184) nagB 1143156..1143860 (-) 705 WP_002995779.1 glucosamine-6-phosphate deaminase -
  DQN32_RS05935 (NCTC13745_01185) queA 1144062..1145090 (+) 1029 WP_031488549.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQN32_RS05940 (NCTC13745_01186) - 1145097..1146317 (+) 1221 WP_002983986.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37847.33 Da        Isoelectric Point: 10.2438

>NTDB_id=1024558 DQN32_RS05920 WP_031488550.1 1141063..1142025(-) (coiA) [Streptococcus pyogenes strain NCTC13745]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
CLSFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1024558 DQN32_RS05920 WP_031488550.1 1141063..1142025(-) (coiA) [Streptococcus pyogenes strain NCTC13745]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
TGTTTGAGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.581

96.875

0.413
  coiA Streptococcus pneumoniae Rx1

41.29

96.875

0.4
  coiA Streptococcus pneumoniae D39

41.29

96.875

0.4
  coiA Streptococcus pneumoniae R6

41.29

96.875

0.4
  coiA Streptococcus pneumoniae TIGR4

41.29

96.875

0.4
  coiA Lactococcus lactis subsp. cremoris KW2

39.024

100

0.4

Multiple sequence alignment