Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQN28_RS06035 Genome accession   NZ_LS483430
Coordinates   1190512..1191177 (-) Length   221 a.a.
NCBI ID   WP_002993195.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12044     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1185512..1196177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS06030 (NCTC12044_01200) hpf 1189884..1190432 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQN28_RS06035 (NCTC12044_01201) comFC/cflB 1190512..1191177 (-) 666 WP_002993195.1 ComF family protein Machinery gene
  DQN28_RS06040 (NCTC12044_01202) comFA/cflA 1191149..1192474 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  DQN28_RS06045 (NCTC12044_01203) - 1192529..1193161 (+) 633 WP_111686325.1 YigZ family protein -
  DQN28_RS06050 (NCTC12044_01204) cysK 1193289..1194230 (+) 942 WP_002983675.1 cysteine synthase A -
  DQN28_RS06055 (NCTC12044_01205) - 1194248..1194625 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  DQN28_RS06060 (NCTC12044_01206) - 1194625..1196025 (-) 1401 WP_002983672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25221.45 Da        Isoelectric Point: 9.3379

>NTDB_id=1024473 DQN28_RS06035 WP_002993195.1 1190512..1191177(-) (comFC/cflB) [Streptococcus pyogenes strain NCTC12044]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1024473 DQN28_RS06035 WP_002993195.1 1190512..1191177(-) (comFC/cflB) [Streptococcus pyogenes strain NCTC12044]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412