Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N45_RS07790 Genome accession   NZ_CP162159
Coordinates   1687373..1687999 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain STK39-C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1682373..1692999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N45_RS07770 (AB3N45_07780) - 1682773..1684533 (-) 1761 WP_320725164.1 Lon protease family protein -
  AB3N45_RS07775 (AB3N45_07785) matP 1684720..1685172 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  AB3N45_RS07780 (AB3N45_07790) ompA 1685236..1686291 (-) 1056 WP_028027914.1 porin OmpA -
  AB3N45_RS07785 (AB3N45_07795) sulA 1686646..1687155 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  AB3N45_RS07790 (AB3N45_07800) sxy/tfoX 1687373..1687999 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3N45_RS07795 (AB3N45_07805) yccS 1687956..1690118 (-) 2163 WP_014831317.1 YccS family putative transporter -
  AB3N45_RS07800 (AB3N45_07810) - 1690138..1690584 (-) 447 WP_013097253.1 YccF domain-containing protein -
  AB3N45_RS07805 (AB3N45_07815) helD 1690707..1692761 (+) 2055 WP_320725165.1 DNA helicase IV -

Sequence


Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=1024404 AB3N45_RS07790 WP_013097255.1 1687373..1687999(+) (sxy/tfoX) [Enterobacter cloacae strain STK39-C]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1024404 AB3N45_RS07790 WP_013097255.1 1687373..1687999(+) (sxy/tfoX) [Enterobacter cloacae strain STK39-C]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAGAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567


Multiple sequence alignment