Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQN75_RS08570 Genome accession   NZ_LS483420
Coordinates   1701075..1701671 (-) Length   198 a.a.
NCBI ID   WP_011285268.1    Uniprot ID   Q48QW4
Organism   Streptococcus pyogenes strain NCTC13739     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696075..1706671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN75_RS08550 (NCTC13739_01689) spx 1697251..1697649 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQN75_RS08555 (NCTC13739_01690) recA 1697940..1699076 (-) 1137 WP_111685303.1 recombinase RecA Machinery gene
  DQN75_RS08560 (NCTC13739_01691) cinA 1699165..1700436 (-) 1272 WP_032459984.1 competence/damage-inducible protein A Machinery gene
  DQN75_RS08565 (NCTC13739_01692) - 1700505..1701065 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  DQN75_RS08570 (NCTC13739_01693) ruvA 1701075..1701671 (-) 597 WP_011285268.1 Holliday junction branch migration protein RuvA Machinery gene
  DQN75_RS08575 (NCTC13739_01694) - 1701673..1702893 (-) 1221 WP_111675058.1 MDR family MFS transporter -
  DQN75_RS08580 (NCTC13739_01695) hexB 1702904..1704886 (-) 1983 WP_111685305.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21811.12 Da        Isoelectric Point: 6.2537

>NTDB_id=1024161 DQN75_RS08570 WP_011285268.1 1701075..1701671(-) (ruvA) [Streptococcus pyogenes strain NCTC13739]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1024161 DQN75_RS08570 WP_011285268.1 1701075..1701671(-) (ruvA) [Streptococcus pyogenes strain NCTC13739]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424