Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQN75_RS02695 Genome accession   NZ_LS483420
Coordinates   514753..515418 (+) Length   221 a.a.
NCBI ID   WP_111684682.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13739     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509753..520418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN75_RS02670 (NCTC13739_00530) - 509904..511304 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQN75_RS02675 (NCTC13739_00531) - 511304..511681 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  DQN75_RS02680 (NCTC13739_00532) cysK 511699..512640 (-) 942 WP_085634512.1 cysteine synthase A -
  DQN75_RS02685 (NCTC13739_00533) - 512768..513400 (-) 633 WP_009880468.1 YigZ family protein -
  DQN75_RS02690 (NCTC13739_00534) comFA/cflA 513456..514781 (+) 1326 WP_110002775.1 DEAD/DEAH box helicase Machinery gene
  DQN75_RS02695 (NCTC13739_00535) comFC/cflB 514753..515418 (+) 666 WP_111684682.1 ComF family protein Machinery gene
  DQN75_RS02700 (NCTC13739_00536) hpf 515498..516046 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25094.30 Da        Isoelectric Point: 9.3380

>NTDB_id=1024116 DQN75_RS02695 WP_111684682.1 514753..515418(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC13739]
MICLLCQQISQTPISITEIIFLRSISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1024116 DQN75_RS02695 WP_111684682.1 514753..515418(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC13739]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGAGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTTCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412