Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AB2S62_RS05660 Genome accession   NZ_CP162100
Coordinates   1200364..1200951 (+) Length   195 a.a.
NCBI ID   WP_367988722.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195364..1205951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS05640 (AB2S62_05400) panP 1195802..1197448 (-) 1647 WP_367988718.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  AB2S62_RS05645 (AB2S62_05405) - 1197556..1198068 (-) 513 WP_367988719.1 hypothetical protein -
  AB2S62_RS05650 (AB2S62_05410) - 1198152..1199057 (-) 906 WP_367988720.1 lysine exporter LysO family protein -
  AB2S62_RS05655 (AB2S62_05415) - 1199078..1199998 (-) 921 WP_367988721.1 HDOD domain-containing protein -
  AB2S62_RS05660 (AB2S62_05420) tfoX 1200364..1200951 (+) 588 WP_367988722.1 TfoX/Sxy family DNA transformation protein Regulator
  AB2S62_RS05665 (AB2S62_05425) - 1201046..1201594 (-) 549 WP_367988723.1 hypothetical protein -
  AB2S62_RS05670 (AB2S62_05430) - 1201776..1202273 (-) 498 WP_367988724.1 response regulator -
  AB2S62_RS05675 (AB2S62_05435) - 1202284..1204230 (-) 1947 WP_367988725.1 ATP-binding protein -
  AB2S62_RS05680 (AB2S62_05440) - 1204404..1205669 (+) 1266 WP_367988726.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22641.03 Da        Isoelectric Point: 8.9213

>NTDB_id=1024039 AB2S62_RS05660 WP_367988722.1 1200364..1200951(+) (tfoX) [Vibrio sp. NTOU-M3]
MDMTEQSFMQYVSKFGTFQKRSMFGGTGLFQEEAMFALISADKIFIRGGDELDPQLIELGCQKYRHVKKQTTATVNYYEV
TELFTERSEQLDHIVKQSIEYSVSQRKFKKSSANRRLRDLPNMQLTLERMVKKAGIEDVETFMELGAAEVFSKVRQTYGS
DVDVKLLWKFAGAIEGIHWKLLQEPRKRQLLSNCQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1024039 AB2S62_RS05660 WP_367988722.1 1200364..1200951(+) (tfoX) [Vibrio sp. NTOU-M3]
ATGGATATGACAGAGCAATCGTTCATGCAGTACGTTAGCAAATTTGGTACTTTCCAAAAACGCTCTATGTTCGGTGGTAC
CGGCTTGTTTCAGGAAGAAGCAATGTTTGCACTTATCAGTGCGGATAAGATTTTTATTCGAGGTGGTGATGAGTTAGACC
CTCAGCTAATTGAGCTCGGTTGTCAGAAGTATCGTCATGTTAAAAAACAGACGACGGCAACTGTAAACTATTATGAAGTG
ACAGAGCTATTTACAGAGAGAAGTGAGCAGCTTGACCATATTGTAAAACAGTCAATTGAATACTCAGTTTCTCAACGTAA
ATTCAAAAAATCATCGGCTAACCGTCGTTTACGAGATTTGCCTAATATGCAACTTACATTAGAGCGAATGGTGAAAAAGG
CGGGCATTGAAGATGTTGAAACATTTATGGAGTTAGGTGCGGCTGAAGTCTTCAGTAAAGTACGTCAGACATATGGCAGT
GATGTTGATGTGAAATTGCTATGGAAATTCGCTGGTGCGATAGAAGGCATTCATTGGAAATTGCTCCAAGAGCCACGTAA
GCGTCAGCTATTATCGAACTGTCAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.611

98.974

0.738
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.611

98.974

0.738
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.611

98.974

0.738
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.611

98.974

0.738
  tfoX Vibrio cholerae strain A1552

74.611

98.974

0.738
  tfoX Vibrio campbellii strain DS40M4

68.205

100

0.682
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.154

100

0.662
  tfoX Aliivibrio fischeri ES114

60.209

97.949

0.59

Multiple sequence alignment