Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB3G27_RS11270 Genome accession   NZ_CP162095
Coordinates   2240117..2240410 (-) Length   97 a.a.
NCBI ID   WP_368196550.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235117..2245410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS11220 (AB3G27_11220) sinR 2235280..2235615 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB3G27_RS11225 (AB3G27_11225) tasA 2235683..2236483 (-) 801 WP_253622435.1 biofilm matrix protein TasA -
  AB3G27_RS11230 (AB3G27_11230) sipW 2236541..2237113 (-) 573 WP_003217306.1 signal peptidase I SipW -
  AB3G27_RS11235 (AB3G27_11235) tapA 2237165..2237692 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  AB3G27_RS11240 (AB3G27_11240) - 2237992..2238270 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  AB3G27_RS11245 (AB3G27_11245) - 2238304..2238498 (-) 195 WP_034620826.1 YqzE family protein -
  AB3G27_RS11250 (AB3G27_11250) comGG 2238558..2238941 (-) 384 WP_368196547.1 competence type IV pilus minor pilin ComGG -
  AB3G27_RS11255 (AB3G27_11255) comGF 2238938..2239438 (-) 501 WP_034620829.1 competence type IV pilus minor pilin ComGF -
  AB3G27_RS11260 (AB3G27_11260) comGE 2239377..2239694 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  AB3G27_RS11265 (AB3G27_11265) comGD 2239678..2240124 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  AB3G27_RS11270 (AB3G27_11270) comGC 2240117..2240410 (-) 294 WP_368196550.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3G27_RS11275 (AB3G27_11275) comGB 2240427..2241467 (-) 1041 WP_368196552.1 competence type IV pilus assembly protein ComGB -
  AB3G27_RS11280 (AB3G27_11280) comGA 2241448..2242518 (-) 1071 WP_249118252.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3G27_RS11285 (AB3G27_11285) - 2242696..2243568 (-) 873 WP_003217438.1 STAS domain-containing protein -
  AB3G27_RS11295 (AB3G27_11295) - 2243792..2244172 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB3G27_RS11300 (AB3G27_11300) - 2244385..2244627 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.74 Da        Isoelectric Point: 7.3837

>NTDB_id=1023993 AB3G27_RS11270 WP_368196550.1 2240117..2240410(-) (comGC) [Bacillus pumilus strain LBUM494]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQVKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1023993 AB3G27_RS11270 WP_368196550.1 2240117..2240410(-) (comGC) [Bacillus pumilus strain LBUM494]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTGATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGTGAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment