Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB3G27_RS11220 Genome accession   NZ_CP162095
Coordinates   2235280..2235615 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2230280..2240615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS11200 (AB3G27_11200) gcvT 2230757..2231854 (-) 1098 WP_368196541.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3G27_RS11205 (AB3G27_11205) - 2232417..2234087 (+) 1671 WP_212045915.1 DEAD/DEAH box helicase -
  AB3G27_RS11210 (AB3G27_11210) - 2234102..2234899 (+) 798 WP_368196543.1 YqhG family protein -
  AB3G27_RS11215 (AB3G27_11215) - 2235082..2235246 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  AB3G27_RS11220 (AB3G27_11220) sinR 2235280..2235615 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB3G27_RS11225 (AB3G27_11225) tasA 2235683..2236483 (-) 801 WP_253622435.1 biofilm matrix protein TasA -
  AB3G27_RS11230 (AB3G27_11230) sipW 2236541..2237113 (-) 573 WP_003217306.1 signal peptidase I SipW -
  AB3G27_RS11235 (AB3G27_11235) tapA 2237165..2237692 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  AB3G27_RS11240 (AB3G27_11240) - 2237992..2238270 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  AB3G27_RS11245 (AB3G27_11245) - 2238304..2238498 (-) 195 WP_034620826.1 YqzE family protein -
  AB3G27_RS11250 (AB3G27_11250) comGG 2238558..2238941 (-) 384 WP_368196547.1 competence type IV pilus minor pilin ComGG -
  AB3G27_RS11255 (AB3G27_11255) comGF 2238938..2239438 (-) 501 WP_034620829.1 competence type IV pilus minor pilin ComGF -
  AB3G27_RS11260 (AB3G27_11260) comGE 2239377..2239694 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  AB3G27_RS11265 (AB3G27_11265) comGD 2239678..2240124 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  AB3G27_RS11270 (AB3G27_11270) comGC 2240117..2240410 (-) 294 WP_368196550.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=1023992 AB3G27_RS11220 WP_012010555.1 2235280..2235615(+) (sinR) [Bacillus pumilus strain LBUM494]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1023992 AB3G27_RS11220 WP_012010555.1 2235280..2235615(+) (sinR) [Bacillus pumilus strain LBUM494]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment