Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQN44_RS00690 Genome accession   NZ_LS483414
Coordinates   107587..108015 (+) Length   142 a.a.
NCBI ID   WP_030127397.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13736     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102587..113015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN44_RS00670 (NCTC13736_00135) - 104917..105282 (+) 366 WP_002986560.1 DUF1033 family protein -
  DQN44_RS00675 (NCTC13736_00136) comGA 105376..106314 (+) 939 WP_030127399.1 competence type IV pilus ATPase ComGA Machinery gene
  DQN44_RS00680 (NCTC13736_00137) comGB 106250..107284 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQN44_RS00685 (NCTC13736_00138) comGC 107286..107612 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQN44_RS00690 (NCTC13736_00139) comGD 107587..108015 (+) 429 WP_030127397.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQN44_RS00695 (NCTC13736_00140) comGE 107972..108256 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQN44_RS00700 (NCTC13736_00141) comGF 108249..108683 (+) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQN44_RS00705 (NCTC13736_00142) comGG 108667..108993 (+) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  DQN44_RS00710 (NCTC13736_00143) comGH 109091..110044 (+) 954 WP_030127396.1 class I SAM-dependent methyltransferase Machinery gene
  DQN44_RS00715 (NCTC13736_00144) - 110103..111299 (+) 1197 WP_011888536.1 acetate kinase -
  DQN44_RS00720 - 111486..111794 (+) 309 WP_030126458.1 hypothetical protein -
  DQN44_RS00725 (NCTC13736_00145) proC 111877..112647 (-) 771 WP_030127395.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16296.01 Da        Isoelectric Point: 10.3481

>NTDB_id=1023682 DQN44_RS00690 WP_030127397.1 107587..108015(+) (comGD) [Streptococcus pyogenes strain NCTC13736]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVVDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1023682 DQN44_RS00690 WP_030127397.1 107587..108015(+) (comGD) [Streptococcus pyogenes strain NCTC13736]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTGTTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366