Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB2J53_RS25375 Genome accession   NZ_CP162020
Coordinates   5046564..5047076 (-) Length   170 a.a.
NCBI ID   WP_048010214.1    Uniprot ID   A0AA46P374
Organism   Cytobacillus firmus strain A4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5041564..5052076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2J53_RS25355 (AB2J53_25355) rplI 5042680..5043126 (-) 447 WP_035328283.1 50S ribosomal protein L9 -
  AB2J53_RS25360 (AB2J53_25360) - 5043123..5045096 (-) 1974 WP_048010216.1 DHH family phosphoesterase -
  AB2J53_RS25365 (AB2J53_25365) - 5045128..5046063 (-) 936 WP_197217281.1 YybS family protein -
  AB2J53_RS25370 (AB2J53_25370) rpsR 5046266..5046505 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  AB2J53_RS25375 (AB2J53_25375) ssbA 5046564..5047076 (-) 513 WP_048010214.1 single-stranded DNA-binding protein Machinery gene
  AB2J53_RS25380 (AB2J53_25380) rpsF 5047112..5047399 (-) 288 WP_048010213.1 30S ribosomal protein S6 -
  AB2J53_RS25385 (AB2J53_25385) - 5047533..5047835 (-) 303 WP_368297713.1 hypothetical protein -
  AB2J53_RS25390 (AB2J53_25390) ychF 5047872..5048972 (-) 1101 WP_163140312.1 redox-regulated ATPase YchF -
  AB2J53_RS25395 (AB2J53_25395) - 5049136..5051130 (-) 1995 WP_368297715.1 molybdopterin-dependent oxidoreductase -
  AB2J53_RS25400 (AB2J53_25400) - 5051158..5051355 (-) 198 WP_035328295.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18860.59 Da        Isoelectric Point: 4.7827

>NTDB_id=1023646 AB2J53_RS25375 WP_048010214.1 5046564..5047076(-) (ssbA) [Cytobacillus firmus strain A4]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1023646 AB2J53_RS25375 WP_048010214.1 5046564..5047076(-) (ssbA) [Cytobacillus firmus strain A4]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTGCTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAATCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCGGTAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGACAGGATAATCGTAATCAGGGCAACTACACTCGTGTGGATCAGGACCCATTCGCAAATGACGGCCAA
ATCGACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.787

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371

Multiple sequence alignment