Detailed information NTG1023635

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: DQN40_RS07490
• Genome accession: NZ_LS483413
• Coordinates: 1487877..1488557 (-)
• Length: 226 a.a.
• NCBI ID: WP_003054017.1
• Uniprot ID: A0ABU0ABG7
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1482877..1493557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN40_RS07455 (NCTC7136_01554)	-	1482921..1483502 (+)	582	WP_012766876.1	CYTH domain-containing protein	-
DQN40_RS07460 (NCTC7136_01555)	-	1483631..1484611 (+)	981	WP_111679192.1	ribose-phosphate diphosphokinase	-
DQN40_RS07465 (NCTC7136_01556)	-	1484608..1485735 (+)	1128	WP_003060086.1	cysteine desulfurase family protein	-
DQN40_RS07470 (NCTC7136_01557)	-	1485725..1486072 (+)	348	WP_003054003.1	DUF1831 domain-containing protein	-
DQN40_RS07475 (NCTC7136_01558)	-	1486140..1486349 (+)	210	WP_003054009.1	DUF4649 family protein	-
DQN40_RS07480 (NCTC7136_01559)	-	1486527..1487171 (+)	645	WP_003054034.1	redox-sensing transcriptional repressor Rex	-
DQN40_RS07485 (NCTC7136_01560)	-	1487180..1487875 (+)	696	WP_003054040.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
DQN40_RS07490 (NCTC7136_01561)	radC	1487877..1488557 (-)	681	WP_003054017.1	DNA repair protein RadC	Machinery gene
DQN40_RS07495 (NCTC7136_01562)	-	1488605..1489732 (-)	1128	WP_012766873.1	AI-2E family transporter	-
DQN40_RS07500 (NCTC7136_01563)	-	1489909..1490523 (-)	615	WP_014612239.1	SGNH/GDSL hydrolase family protein	-
DQN40_RS07505 (NCTC7136_01564)	-	1490743..1491666 (+)	924	WP_111679193.1	AraC family transcriptional regulator	-
DQN40_RS07510 (NCTC7136_01565)	-	1491725..1493257 (-)	1533	WP_003059904.1	ClC family H(+)/Cl(-) exchange transporter	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25681.95 Da
• Isoelectric Point: 7.3708

>NTDB_id=1023635 DQN40_RS07490 WP_003054017.1 1487877..1488557(-) (radC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MYSIKCDDIKLMPRERLMRMGAEALSNQELLAILLRTGNKEKHVLELSSYLLSHLESLADFKKLSLQELQTLAGIGKVKA
IEIKAMIELAARIQATEQTLSERILSSVQIAEKMMAVLGDKKQEHLVVLYLDSQNRVIEEKTIFIGTVRRSIAEPREILY
YACKNMATSLIVVHNHPSGSIDPSPNDYAFTEKIKRSCEDLGIICLDHIIVSYQSYYSFREKSSLF

Nucleotide

• Length: 681 bp

>NTDB_id=1023635 DQN40_RS07490 WP_003054017.1 1487877..1488557(-) (radC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGTATTCGATCAAATGCGATGATATAAAGCTGATGCCAAGAGAACGGTTAATGCGCATGGGGGCCGAAGCCTTAAGCAA
CCAAGAATTATTAGCCATTTTATTAAGGACAGGAAATAAAGAAAAACACGTTTTGGAATTATCTTCTTACCTGTTGTCAC
ATCTAGAAAGCTTAGCAGATTTTAAAAAGCTGTCTCTGCAAGAATTACAAACCTTAGCGGGAATCGGTAAAGTCAAAGCA
ATTGAAATCAAAGCAATGATTGAATTGGCTGCTAGGATTCAAGCAACTGAGCAAACACTGTCTGAGAGGATTCTTTCGAG
TGTTCAGATTGCAGAGAAGATGATGGCTGTTTTAGGCGATAAAAAGCAGGAGCATTTAGTGGTTCTGTATTTAGATAGTC
AAAATCGCGTGATTGAAGAGAAAACAATTTTTATAGGAACAGTCAGACGTTCGATCGCAGAACCTAGAGAAATTTTATAT
TACGCTTGTAAAAATATGGCAACAAGTCTTATTGTGGTTCACAATCACCCATCAGGAAGTATTGACCCGAGTCCTAATGA
TTACGCTTTTACTGAAAAAATAAAACGATCATGTGAAGACCTAGGCATCATTTGCCTGGATCACATCATCGTTAGTTATC
AATCTTATTATAGTTTCCGAGAAAAATCATCTCTTTTCTAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (13-81)

• RadC-like JAB domain (RadC) (106-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	60.177	100	0.602
radC	Streptococcus pneumoniae R6	59.735	100	0.597
radC	Streptococcus pneumoniae D39	59.735	100	0.597
radC	Streptococcus gordonii str. Challis substr. CH1	57.08	100	0.571
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	43.318	96.018	0.416