Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3F25_RS06830 Genome accession   NZ_CP162010
Coordinates   1477447..1477950 (+) Length   167 a.a.
NCBI ID   WP_373603115.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1472447..1482950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS06820 (AB3F25_06815) - 1473560..1474333 (+) 774 WP_373603113.1 M48 family metallopeptidase -
  AB3F25_RS06825 (AB3F25_06820) uvrA 1474463..1477294 (-) 2832 WP_373603114.1 excinuclease ABC subunit UvrA -
  AB3F25_RS06830 (AB3F25_06825) ssb 1477447..1477950 (+) 504 WP_373603115.1 single-stranded DNA-binding protein Machinery gene
  AB3F25_RS06835 (AB3F25_06830) - 1478190..1478768 (+) 579 WP_373603116.1 NAD(P)H-dependent oxidoreductase -
  AB3F25_RS06840 (AB3F25_06835) - 1479067..1479354 (-) 288 WP_373603117.1 helix-turn-helix domain-containing protein -
  AB3F25_RS06845 (AB3F25_06840) - 1479279..1480094 (+) 816 WP_373603118.1 SDR family NAD(P)-dependent oxidoreductase -
  AB3F25_RS06850 (AB3F25_06845) - 1480162..1480530 (-) 369 WP_373604345.1 rhodanese-like domain-containing protein -
  AB3F25_RS06855 (AB3F25_06850) - 1480842..1482137 (+) 1296 WP_373603119.1 ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18773.58 Da        Isoelectric Point: 5.2649

>NTDB_id=1023488 AB3F25_RS06830 WP_373603115.1 1477447..1477950(+) (ssb) [Aggregatibacter sp. HMT-949 strain W10649]
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQIYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGSRNQNAGGYAASDMAQSAPQASYQSRSNNNFQSSRPTAQQTAPQPEAPMDG
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1023488 AB3F25_RS06830 WP_373603115.1 1477447..1477950(+) (ssb) [Aggregatibacter sp. HMT-949 strain W10649]
ATGGCTGGAGTAAATAAAGTCATCATCGTGGGTCATTTAGGTAATGATCCGGAAATTCGCACGATGCCAAACGGTGATGC
GGTGGCAAACATTAGCGTGGCGACCAGTGAAAGCTGGAATGATCGTAACACCGGCGAACGTCGCGAGGTAACCGAATGGC
ACCGCATTGTATTCTATCGTCGCCAAGCGGAAATTTGTGGCGAATATTTACGTAAAGGCTCGCAAATTTATGTAGAAGGT
CGTTTACGTACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTATACCACCGAAATCCAAGGAGATGTGATGCAAAT
GCTCGGCAGCCGCAACCAAAATGCCGGTGGTTACGCAGCATCAGATATGGCGCAAAGCGCACCGCAAGCGTCTTACCAAT
CTCGCTCAAACAACAACTTCCAATCTTCCCGTCCGACTGCGCAACAAACTGCACCACAGCCGGAAGCGCCGATGGATGGA
TTCGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.222

100

0.725
  ssb Vibrio cholerae strain A1552

55.682

100

0.587
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.515
  ssb Neisseria meningitidis MC58

49.425

100

0.515

Multiple sequence alignment