Detailed information
Bioinformatically predicted
Overview
| Name | comN | Type | Machinery gene |
| Locus tag | AB3F25_RS03320 | Genome accession | NZ_CP162010 |
| Coordinates | 704042..704557 (+) | Length | 171 a.a. |
| NCBI ID | WP_373604092.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. HMT-949 strain W10649 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 699042..709557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3F25_RS03295 (AB3F25_03290) | nudF | 699737..700369 (+) | 633 | WP_373604087.1 | ADP-ribose diphosphatase | - |
| AB3F25_RS03300 (AB3F25_03295) | cpdA | 700379..701203 (+) | 825 | WP_373604088.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| AB3F25_RS03305 (AB3F25_03300) | ybeY | 701482..701946 (+) | 465 | WP_373604089.1 | rRNA maturation RNase YbeY | - |
| AB3F25_RS03310 (AB3F25_03305) | - | 701970..702755 (+) | 786 | WP_373604090.1 | Cof-type HAD-IIB family hydrolase | - |
| AB3F25_RS03315 (AB3F25_03310) | suhB | 703039..703842 (-) | 804 | WP_373604091.1 | inositol-1-monophosphatase | - |
| AB3F25_RS03320 (AB3F25_03315) | comN | 704042..704557 (+) | 516 | WP_373604092.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| AB3F25_RS03325 (AB3F25_03320) | comO | 704593..705267 (+) | 675 | WP_373604315.1 | hypothetical protein | Machinery gene |
| AB3F25_RS03330 (AB3F25_03325) | comP | 705252..705959 (+) | 708 | WP_373604093.1 | DUF2572 family protein | Machinery gene |
| AB3F25_RS03335 (AB3F25_03330) | comQ | 705982..706239 (+) | 258 | WP_373604316.1 | DUF5374 domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19349.41 Da Isoelectric Point: 8.4737
>NTDB_id=1023481 AB3F25_RS03320 WP_373604092.1 704042..704557(+) (comN) [Aggregatibacter sp. HMT-949 strain W10649]
MYKGATLMELLIGLAIIGIALSFAFPLWQTDNSKMILAKEQHRLYLFLRQIQARAENSSDVWLVLIDQNPATREWCVSAQ
LKNDKLCDCLHPTNCPKDVYAHFYYPYFAKKTNILSPKIYPTAIARFDGVRNTFEANCFSLQSGDESTVFSFFNVGSLKL
KTGQSMSACAK
MYKGATLMELLIGLAIIGIALSFAFPLWQTDNSKMILAKEQHRLYLFLRQIQARAENSSDVWLVLIDQNPATREWCVSAQ
LKNDKLCDCLHPTNCPKDVYAHFYYPYFAKKTNILSPKIYPTAIARFDGVRNTFEANCFSLQSGDESTVFSFFNVGSLKL
KTGQSMSACAK
Nucleotide
Download Length: 516 bp
>NTDB_id=1023481 AB3F25_RS03320 WP_373604092.1 704042..704557(+) (comN) [Aggregatibacter sp. HMT-949 strain W10649]
ATGTATAAAGGTGCGACGTTGATGGAGTTATTAATCGGTTTGGCGATTATCGGTATCGCTTTGAGTTTTGCATTTCCTCT
CTGGCAAACCGATAATTCAAAAATGATTCTGGCAAAAGAACAACATCGTTTATACCTATTTTTACGTCAAATTCAGGCGA
GAGCGGAAAATTCTTCCGATGTTTGGCTTGTTTTGATCGATCAAAATCCGGCCACACGAGAATGGTGTGTGAGTGCTCAA
TTAAAAAACGACAAACTTTGCGATTGTTTGCATCCGACCAATTGTCCGAAGGATGTCTATGCGCATTTTTACTACCCCTA
TTTTGCGAAAAAAACCAATATACTCAGCCCCAAAATTTATCCTACCGCAATTGCACGATTTGATGGGGTAAGAAACACTT
TTGAGGCAAATTGCTTTTCCTTACAGAGCGGTGATGAAAGTACCGTATTTTCCTTTTTTAATGTCGGTAGTTTGAAATTG
AAAACCGGTCAGTCTATGAGTGCCTGTGCAAAGTGA
ATGTATAAAGGTGCGACGTTGATGGAGTTATTAATCGGTTTGGCGATTATCGGTATCGCTTTGAGTTTTGCATTTCCTCT
CTGGCAAACCGATAATTCAAAAATGATTCTGGCAAAAGAACAACATCGTTTATACCTATTTTTACGTCAAATTCAGGCGA
GAGCGGAAAATTCTTCCGATGTTTGGCTTGTTTTGATCGATCAAAATCCGGCCACACGAGAATGGTGTGTGAGTGCTCAA
TTAAAAAACGACAAACTTTGCGATTGTTTGCATCCGACCAATTGTCCGAAGGATGTCTATGCGCATTTTTACTACCCCTA
TTTTGCGAAAAAAACCAATATACTCAGCCCCAAAATTTATCCTACCGCAATTGCACGATTTGATGGGGTAAGAAACACTT
TTGAGGCAAATTGCTTTTCCTTACAGAGCGGTGATGAAAGTACCGTATTTTCCTTTTTTAATGTCGGTAGTTTGAAATTG
AAAACCGGTCAGTCTATGAGTGCCTGTGCAAAGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comN | Haemophilus influenzae Rd KW20 |
68.047 |
98.83 |
0.673 |