Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AB3F25_RS03325 Genome accession   NZ_CP162010
Coordinates   704593..705267 (+) Length   224 a.a.
NCBI ID   WP_373604315.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699593..710267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS03295 (AB3F25_03290) nudF 699737..700369 (+) 633 WP_373604087.1 ADP-ribose diphosphatase -
  AB3F25_RS03300 (AB3F25_03295) cpdA 700379..701203 (+) 825 WP_373604088.1 3',5'-cyclic-AMP phosphodiesterase -
  AB3F25_RS03305 (AB3F25_03300) ybeY 701482..701946 (+) 465 WP_373604089.1 rRNA maturation RNase YbeY -
  AB3F25_RS03310 (AB3F25_03305) - 701970..702755 (+) 786 WP_373604090.1 Cof-type HAD-IIB family hydrolase -
  AB3F25_RS03315 (AB3F25_03310) suhB 703039..703842 (-) 804 WP_373604091.1 inositol-1-monophosphatase -
  AB3F25_RS03320 (AB3F25_03315) comN 704042..704557 (+) 516 WP_373604092.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3F25_RS03325 (AB3F25_03320) comO 704593..705267 (+) 675 WP_373604315.1 hypothetical protein Machinery gene
  AB3F25_RS03330 (AB3F25_03325) comP 705252..705959 (+) 708 WP_373604093.1 DUF2572 family protein Machinery gene
  AB3F25_RS03335 (AB3F25_03330) comQ 705982..706239 (+) 258 WP_373604316.1 DUF5374 domain-containing protein Machinery gene
  AB3F25_RS03340 (AB3F25_03335) recC 706276..709668 (+) 3393 WP_373604094.1 exodeoxyribonuclease V subunit gamma -
  AB3F25_RS03345 (AB3F25_03340) nrdR 709725..710174 (+) 450 WP_373604095.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25162.06 Da        Isoelectric Point: 8.2249

>NTDB_id=1023482 AB3F25_RS03325 WP_373604315.1 704593..705267(+) (comO) [Aggregatibacter sp. HMT-949 strain W10649]
MISLAISSWLLLLISAFYVSTQVQNREILLRLKLQAELQRTIQLIGKDIRRAGFRALNSGVIETNLPLFELDEQGTAIFL
SQEEGAAPRSCALFFYDLDGKGCIGKGTTKYCAKNNRNTAIETTSELFGYKLSQKMVKTKLTYQTAIPAHCKAEECRTAL
QQQACNPGGGWRSLLDEEEYEITKLQFDWLIEGKGMQIQLAGNLKGHPHIKYETALVIGLWNQK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1023482 AB3F25_RS03325 WP_373604315.1 704593..705267(+) (comO) [Aggregatibacter sp. HMT-949 strain W10649]
ATGATTTCATTAGCTATTTCCTCTTGGCTATTACTGTTAATTTCAGCGTTTTATGTTTCAACTCAAGTACAAAACCGAGA
AATTTTATTACGTCTGAAATTGCAAGCTGAATTACAACGTACGATTCAACTCATCGGAAAGGATATTCGGCGAGCCGGTT
TTCGTGCATTGAATAGCGGTGTTATTGAAACGAATTTGCCGCTTTTTGAATTGGATGAACAAGGAACGGCCATTTTTTTA
TCGCAAGAAGAGGGTGCAGCTCCGCGTAGTTGCGCATTATTTTTCTATGATTTGGATGGCAAAGGGTGCATTGGCAAAGG
GACGACGAAGTATTGCGCAAAAAATAATCGAAATACGGCAATTGAAACGACAAGCGAATTGTTCGGTTATAAATTAAGTC
AAAAAATGGTGAAAACGAAATTGACCTATCAAACGGCCATTCCCGCTCATTGTAAAGCTGAAGAATGTCGAACAGCGTTG
CAACAACAAGCTTGCAATCCCGGAGGCGGTTGGCGAAGTTTATTGGATGAAGAAGAGTATGAAATTACGAAATTACAATT
TGATTGGTTAATTGAGGGGAAAGGAATGCAGATTCAATTGGCGGGAAATTTAAAGGGGCATCCGCATATTAAATACGAAA
CCGCATTGGTGATAGGTTTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

67.308

92.857

0.625

Multiple sequence alignment