Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3G31_RS20525 Genome accession   NZ_CP162006
Coordinates   4412136..4412690 (-) Length   184 a.a.
NCBI ID   WP_367847896.1    Uniprot ID   -
Organism   Rhodoferax sp. WC2427     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4407136..4417690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G31_RS20505 (AB3G31_20505) - 4408410..4409321 (-) 912 WP_367847892.1 helix-turn-helix domain-containing protein -
  AB3G31_RS20510 (AB3G31_20510) - 4409460..4410110 (-) 651 WP_367847893.1 NADPH-dependent F420 reductase -
  AB3G31_RS20515 (AB3G31_20515) - 4410186..4411160 (-) 975 WP_367847894.1 zinc-dependent alcohol dehydrogenase family protein -
  AB3G31_RS20520 (AB3G31_20520) - 4411229..4411876 (+) 648 WP_367847895.1 TetR/AcrR family transcriptional regulator -
  AB3G31_RS20525 (AB3G31_20525) ssb 4412136..4412690 (-) 555 WP_367847896.1 single-stranded DNA-binding protein Machinery gene
  AB3G31_RS20530 (AB3G31_20530) - 4412715..4413887 (-) 1173 WP_367850390.1 MFS transporter -
  AB3G31_RS20535 (AB3G31_20535) uvrA 4414057..4416954 (+) 2898 WP_367850391.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19574.84 Da        Isoelectric Point: 5.9604

>NTDB_id=1023459 AB3G31_RS20525 WP_367847896.1 4412136..4412690(-) (ssb) [Rhodoferax sp. WC2427]
MASVNKVIIVGNLGRDPEVRTFPSGDRVANVTIATTETWKDKQTGERREATEWHRVVFRGGLAGIVEQYLRKGSQVYVEG
SIRSRKYNDATGMEKSITEIVATEMTMLGSRQGMGGPQGGGNDGGYDDGGGYDNSPAPAPARRPMAPAPASRPPMAAPAP
RPAPPPPASRASSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1023459 AB3G31_RS20525 WP_367847896.1 4412136..4412690(-) (ssb) [Rhodoferax sp. WC2427]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCCGAGGTGCGCACCTTCCCCAGTGGCGACCG
GGTGGCCAATGTCACCATCGCCACCACCGAAACCTGGAAAGACAAGCAAACCGGCGAGCGCCGTGAAGCCACCGAATGGC
ACCGTGTGGTGTTTCGCGGCGGTCTGGCGGGCATCGTCGAACAGTACCTGCGCAAGGGCTCGCAGGTATATGTCGAGGGC
TCCATCCGCAGCCGCAAGTACAACGACGCGACCGGCATGGAAAAGTCCATCACCGAAATCGTTGCGACCGAAATGACCAT
GCTGGGCAGCCGCCAGGGCATGGGTGGCCCGCAGGGCGGTGGCAATGACGGGGGGTACGACGACGGCGGTGGCTACGACA
ACAGCCCGGCCCCCGCGCCCGCCCGCCGCCCCATGGCACCCGCGCCCGCCAGCCGTCCTCCGATGGCCGCCCCGGCACCC
CGGCCCGCACCGCCGCCGCCCGCGAGCCGTGCCTCCAGCGGTTTTGACGATATGGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.193

100

0.495
  ssb Vibrio cholerae strain A1552

46.875

100

0.489
  ssb Neisseria meningitidis MC58

46.524

100

0.473
  ssb Neisseria gonorrhoeae MS11

46.774

100

0.473

Multiple sequence alignment