Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB3G53_RS16530 Genome accession   NZ_CP161999
Coordinates   3511903..3512643 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain SIMBA061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506903..3517643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS16510 (AB3G53_16510) aroB 3507440..3508522 (-) 1083 WP_057094658.1 3-dehydroquinate synthase -
  AB3G53_RS16515 (AB3G53_16515) aroK 3508551..3509120 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AB3G53_RS16520 (AB3G53_16520) pilQ 3509132..3511297 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AB3G53_RS16525 (AB3G53_16525) pilP 3511365..3511892 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB3G53_RS16530 (AB3G53_16530) pilO 3511903..3512643 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB3G53_RS16535 (AB3G53_16535) pilN 3512640..3513281 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AB3G53_RS16540 (AB3G53_16540) pilM 3513281..3514339 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB3G53_RS16545 (AB3G53_16545) ponA 3514501..3517056 (+) 2556 WP_057094660.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1023405 AB3G53_RS16530 WP_000076101.1 3511903..3512643(-) (pilO) [Acinetobacter baumannii strain SIMBA061]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1023405 AB3G53_RS16530 WP_000076101.1 3511903..3512643(-) (pilO) [Acinetobacter baumannii strain SIMBA061]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment