Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB3G53_RS16535 Genome accession   NZ_CP161999
Coordinates   3512640..3513281 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain SIMBA061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507640..3518281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS16515 (AB3G53_16515) aroK 3508551..3509120 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AB3G53_RS16520 (AB3G53_16520) pilQ 3509132..3511297 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AB3G53_RS16525 (AB3G53_16525) pilP 3511365..3511892 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB3G53_RS16530 (AB3G53_16530) pilO 3511903..3512643 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB3G53_RS16535 (AB3G53_16535) pilN 3512640..3513281 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AB3G53_RS16540 (AB3G53_16540) pilM 3513281..3514339 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB3G53_RS16545 (AB3G53_16545) ponA 3514501..3517056 (+) 2556 WP_057094660.1 penicillin-binding protein PBP1a -
  AB3G53_RS16550 (AB3G53_16550) - 3517074..3517898 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  AB3G53_RS16555 (AB3G53_16555) - 3517901..3518233 (-) 333 WP_057094662.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=1023406 AB3G53_RS16535 WP_000201223.1 3512640..3513281(-) (pilN) [Acinetobacter baumannii strain SIMBA061]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1023406 AB3G53_RS16535 WP_000201223.1 3512640..3513281(-) (pilN) [Acinetobacter baumannii strain SIMBA061]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment