Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB3G53_RS16405 Genome accession   NZ_CP161999
Coordinates   3485007..3485825 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SIMBA061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480007..3490825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS16390 (AB3G53_16390) pilE 3480224..3480649 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  AB3G53_RS16395 (AB3G53_16395) pilY2 3480646..3481128 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  AB3G53_RS16400 (AB3G53_16400) pilY1 3481141..3484995 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  AB3G53_RS16405 (AB3G53_16405) pilX 3485007..3485825 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB3G53_RS16410 (AB3G53_16410) pilW 3485822..3486823 (-) 1002 WP_057093627.1 PilW family protein Machinery gene
  AB3G53_RS16415 (AB3G53_16415) pilV 3486824..3487384 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB3G53_RS16420 (AB3G53_16420) fimU 3487378..3487851 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3G53_RS16425 (AB3G53_16425) ispH 3488021..3488971 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB3G53_RS16430 (AB3G53_16430) gmk 3489094..3489723 (+) 630 WP_000015937.1 guanylate kinase -
  AB3G53_RS16435 (AB3G53_16435) rpoZ 3489796..3490074 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB3G53_RS16440 (AB3G53_16440) - 3490113..3490243 (+) 131 Protein_3204 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1023398 AB3G53_RS16405 WP_000149374.1 3485007..3485825(-) (pilX) [Acinetobacter baumannii strain SIMBA061]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1023398 AB3G53_RS16405 WP_000149374.1 3485007..3485825(-) (pilX) [Acinetobacter baumannii strain SIMBA061]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCCGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment