Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQN21_RS07580 Genome accession   NZ_LS483409
Coordinates   1496343..1498313 (-) Length   656 a.a.
NCBI ID   WP_077497050.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491343..1503313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS07560 (NCTC13773_01537) - 1491852..1492778 (-) 927 WP_077497046.1 ATP-binding cassette domain-containing protein -
  DQN21_RS07565 (NCTC13773_01538) amiE 1492789..1493841 (-) 1053 WP_074657565.1 ABC transporter ATP-binding protein Regulator
  DQN21_RS07570 (NCTC13773_01539) amiD 1493850..1494776 (-) 927 WP_061459706.1 oligopeptide ABC transporter permease OppC Regulator
  DQN21_RS07575 (NCTC13773_01540) amiC 1494773..1496275 (-) 1503 WP_077497048.1 ABC transporter permease Regulator
  DQN21_RS07580 (NCTC13773_01541) amiA 1496343..1498313 (-) 1971 WP_077497050.1 peptide ABC transporter substrate-binding protein Regulator
  DQN21_RS07585 (NCTC13773_01542) - 1498906..1499241 (-) 336 WP_009854479.1 metal-sulfur cluster assembly factor -
  DQN21_RS07590 (NCTC13773_01543) rpoD 1499263..1500372 (-) 1110 WP_009854480.1 RNA polymerase sigma factor RpoD -
  DQN21_RS07595 (NCTC13773_01544) dnaG 1500381..1502189 (-) 1809 WP_331852238.1 DNA primase -
  DQN21_RS07600 (NCTC13773_01545) mscL 1502510..1502887 (+) 378 WP_009854482.1 large conductance mechanosensitive channel protein MscL -
  DQN21_RS07605 (NCTC13773_01546) rpsU 1502949..1503125 (-) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72691.95 Da        Isoelectric Point: 4.4527

>NTDB_id=1023396 DQN21_RS07580 WP_077497050.1 1496343..1498313(-) (amiA) [Streptococcus gallolyticus strain NCTC13773]
MKKGYLVAAGVTLVSLAALQGCSNSSSAKTESKTYSYVYTADPNTLDYTVSGRATTSNITTEGIDGLLENDKYGNLIPSL
AKDWKVSADGLTYTYTLRKGIKWYTSDGEEYAEVTADDFVTGLKHAADKKSDALYIVQDSIKGLNDYVEGTTKDFSEVGI
KAVDKYTVQYTLNQPESYWNSKTTYGILQPVNADFLKSKGDDFGSVDPSSILYNGPFIVKSITSKSSIEFEKNENYWDAD
KVKLDAVKLTYSDGSDPESLYKNFDKGNYSEARLYPTKSSYKAIEKKYKDEIYYAPQDQTTYYVSFNLNRKAYEFTSKEN
DTQKTDTHKAILNKDFRQAITFAFDRTAYNSQSVGKEAASKSLRNLFVPPTFISTNGTEFGELVKEDLAGDSTWSDVDFS
DAQDGLYNVDKAKTSFEKAKAALEAEGVQFPIHIDIAADQTSDVAVQRVSSLKQSVEASLGTDNIIIDIQKESEDDYYRT
GYYAESADQKDYDISDGSGWSPDYDDPSTYLDIFNSESGATSDNIGVDTNDADAKAEAEKAVGLDTYTELTKAAAAITDD
LDARYKAYAKAQAWLTDNAIIIPTISLGATPKLSKVVPFTASYSVSGSKGGTYKYVEIQDEPVTTKQYEKALKKWEKAKE
KSNKEYQEKLSEHIED

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1023396 DQN21_RS07580 WP_077497050.1 1496343..1498313(-) (amiA) [Streptococcus gallolyticus strain NCTC13773]
ATGAAAAAGGGTTATTTAGTAGCAGCAGGTGTCACTCTTGTGTCGTTGGCGGCTTTGCAAGGGTGTTCAAATTCAAGTTC
TGCTAAAACAGAAAGCAAGACATATTCTTACGTATATACTGCGGATCCTAATACGCTTGATTATACTGTATCTGGTCGTG
CTACAACATCTAATATAACTACCGAAGGTATAGATGGTTTACTAGAGAATGATAAATATGGTAATTTGATTCCTTCTCTT
GCTAAAGATTGGAAAGTTTCAGCGGACGGGTTGACATATACCTATACACTCCGCAAAGGTATTAAGTGGTACACCTCTGA
TGGTGAAGAATATGCCGAAGTGACAGCAGATGATTTTGTAACAGGTCTAAAACACGCAGCTGATAAGAAGTCTGATGCTT
TGTATATCGTTCAAGATTCGATTAAAGGCTTGAATGATTATGTTGAAGGAACGACAAAGGATTTCTCAGAAGTCGGTATC
AAAGCAGTTGATAAATACACTGTTCAATACACTTTAAACCAACCAGAAAGTTATTGGAATTCAAAAACAACCTACGGTAT
TTTGCAACCTGTTAATGCAGACTTTTTGAAATCAAAAGGCGATGACTTTGGTTCTGTGGATCCATCAAGTATTCTTTACA
ATGGACCATTTATCGTAAAATCAATCACTTCTAAATCTTCCATAGAGTTTGAAAAGAATGAAAATTATTGGGATGCAGAT
AAAGTAAAACTTGATGCGGTGAAATTAACTTATAGTGACGGTTCTGATCCAGAATCACTCTATAAAAACTTTGATAAAGG
TAACTATAGTGAAGCACGTCTTTATCCAACGAAGTCAAGTTATAAAGCTATTGAGAAAAAATATAAAGACGAAATTTATT
ATGCACCACAAGATCAGACGACTTATTATGTATCCTTTAACTTGAATCGTAAAGCTTACGAATTTACTTCAAAAGAAAAT
GATACTCAAAAAACGGACACACATAAAGCAATTTTAAATAAAGATTTCCGTCAAGCCATTACCTTTGCTTTTGATAGAAC
AGCTTATAATTCGCAAAGTGTAGGTAAGGAAGCAGCATCGAAATCACTTCGTAATTTATTTGTACCGCCAACATTTATTT
CTACTAACGGAACGGAGTTTGGAGAACTTGTTAAAGAAGATTTGGCGGGTGATTCAACTTGGAGCGATGTTGATTTTTCA
GATGCTCAAGATGGGCTTTATAATGTTGATAAAGCAAAAACTTCATTTGAAAAAGCAAAAGCTGCTCTTGAAGCAGAGGG
AGTGCAGTTCCCAATTCATATAGATATTGCGGCTGATCAGACTTCTGATGTTGCAGTCCAACGAGTAAGCTCTTTGAAAC
AATCTGTTGAAGCTTCGCTTGGGACAGATAATATTATAATTGATATTCAAAAAGAAAGTGAAGATGATTATTATCGTACA
GGTTACTACGCTGAATCCGCAGATCAAAAAGATTATGATATTTCAGATGGTTCAGGTTGGTCTCCGGATTATGACGACCC
TTCAACTTATTTAGATATTTTCAATTCAGAATCTGGTGCCACATCTGATAATATTGGAGTTGATACCAACGATGCGGATG
CTAAGGCTGAAGCTGAAAAGGCAGTAGGGCTTGATACTTATACAGAGTTAACAAAGGCTGCTGCTGCTATTACAGATGAT
TTGGATGCACGCTATAAAGCTTATGCGAAAGCACAAGCTTGGCTAACGGATAATGCTATTATTATTCCAACGATTAGTTT
AGGAGCAACACCAAAACTTTCAAAAGTCGTACCATTTACAGCATCTTATTCAGTATCTGGTAGTAAAGGGGGAACGTATA
AATACGTTGAAATTCAAGATGAGCCTGTAACTACTAAGCAATATGAAAAAGCATTGAAGAAATGGGAAAAAGCTAAGGAA
AAATCAAACAAAGAATATCAGGAAAAACTTTCAGAGCATATTGAAGACTAG

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.985

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

53.544

100

0.541
  amiA3 Streptococcus thermophilus LMD-9

53.243

100

0.538

Multiple sequence alignment