Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   AB3G53_RS16410 Genome accession   NZ_CP161999
Coordinates   3485822..3486823 (-) Length   333 a.a.
NCBI ID   WP_057093627.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480822..3491823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G53_RS16400 (AB3G53_16400) pilY1 3481141..3484995 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  AB3G53_RS16405 (AB3G53_16405) pilX 3485007..3485825 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB3G53_RS16410 (AB3G53_16410) pilW 3485822..3486823 (-) 1002 WP_057093627.1 PilW family protein Machinery gene
  AB3G53_RS16415 (AB3G53_16415) pilV 3486824..3487384 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB3G53_RS16420 (AB3G53_16420) fimU 3487378..3487851 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3G53_RS16425 (AB3G53_16425) ispH 3488021..3488971 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB3G53_RS16430 (AB3G53_16430) gmk 3489094..3489723 (+) 630 WP_000015937.1 guanylate kinase -
  AB3G53_RS16435 (AB3G53_16435) rpoZ 3489796..3490074 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB3G53_RS16440 (AB3G53_16440) - 3490113..3490243 (+) 131 Protein_3204 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35831.51 Da        Isoelectric Point: 6.1010

>NTDB_id=1023399 AB3G53_RS16410 WP_057093627.1 3485822..3486823(-) (pilW) [Acinetobacter baumannii strain SIMBA061]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWRGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1023399 AB3G53_RS16410 WP_057093627.1 3485822..3486823(-) (pilW) [Acinetobacter baumannii strain SIMBA061]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAGAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997

Multiple sequence alignment