Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AB3G51_RS18385 Genome accession   NZ_CP161992
Coordinates   3825733..3826863 (+) Length   376 a.a.
NCBI ID   WP_046127506.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SIMBA034     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3820733..3831863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G51_RS18360 (AB3G51_18360) - 3820994..3821200 (-) 207 WP_046127503.1 hypothetical protein -
  AB3G51_RS18365 (AB3G51_18365) - 3821253..3823367 (-) 2115 WP_046127502.1 TonB-dependent copper receptor -
  AB3G51_RS18370 (AB3G51_18370) - 3823440..3823868 (-) 429 WP_000231981.1 DUF2946 family protein -
  AB3G51_RS18375 (AB3G51_18375) def 3823905..3824435 (-) 531 WP_001196539.1 peptide deformylase -
  AB3G51_RS18380 (AB3G51_18380) tsaP 3824558..3825712 (+) 1155 WP_000755275.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AB3G51_RS18385 (AB3G51_18385) dprA 3825733..3826863 (+) 1131 WP_046127506.1 DNA-processing protein DprA Machinery gene
  AB3G51_RS18390 (AB3G51_18390) - 3826914..3827483 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  AB3G51_RS18395 (AB3G51_18395) - 3827876..3828796 (-) 921 WP_000084546.1 DMT family transporter -
  AB3G51_RS18400 (AB3G51_18400) - 3828902..3829552 (-) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  AB3G51_RS18405 (AB3G51_18405) - 3829689..3830903 (+) 1215 WP_000372838.1 MFS transporter -
  AB3G51_RS18410 (AB3G51_18410) - 3830925..3831689 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41882.43 Da        Isoelectric Point: 6.5899

>NTDB_id=1023311 AB3G51_RS18385 WP_046127506.1 3825733..3826863(+) (dprA) [Acinetobacter baumannii strain SIMBA034]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTTQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIGLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1023311 AB3G51_RS18385 WP_046127506.1 3825733..3826863(+) (dprA) [Acinetobacter baumannii strain SIMBA034]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGACCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCAGATGACTCTGGCTATCCTACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCCACTCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGGCCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.67

100

0.987

  dprA Acinetobacter baumannii strain A118

97.34

100

0.973

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38


Multiple sequence alignment