Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQN33_RS07360 Genome accession   NZ_LS483408
Coordinates   1488979..1489653 (-) Length   224 a.a.
NCBI ID   WP_111673405.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483979..1494653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS07355 (NCTC4674_01564) hpf 1488355..1488903 (-) 549 WP_015911695.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQN33_RS07360 (NCTC4674_01565) comFC/cflB 1488979..1489653 (-) 675 WP_111673405.1 ComF family protein Machinery gene
  DQN33_RS07365 (NCTC4674_01566) comFA/cflA 1489643..1490944 (-) 1302 WP_015911697.1 DEAD/DEAH box helicase Machinery gene
  DQN33_RS07370 (NCTC4674_01567) - 1491001..1491630 (+) 630 WP_111673619.1 YigZ family protein -
  DQN33_RS07375 (NCTC4674_01568) cysK 1491739..1492671 (+) 933 WP_046388756.1 cysteine synthase A -
  DQN33_RS07380 (NCTC4674_01569) - 1492686..1493042 (-) 357 WP_015911700.1 S1 RNA-binding domain-containing protein -
  DQN33_RS07385 (NCTC4674_01570) - 1493042..1494442 (-) 1401 WP_046393652.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26573.81 Da        Isoelectric Point: 8.7124

>NTDB_id=1023293 DQN33_RS07360 WP_111673405.1 1488979..1489653(-) (comFC/cflB) [Streptococcus uberis strain NCTC4674]
MDNSCLICNQWIEQELSLLEILCFQQKEFLLCKDCEWALQPIKSQFCPRCYKVGEESICHDCLKWSEKGYQVNHRALYVY
NGKMKDYFAKYKFQGDYILKSVFSKKIAKIIKNDYKGYVLVPVPISQKRYYERGYNQVEEILKSEKLTYTDLVLKREGKR
HSHLNKREREQSENPFYLNKIEKTIPENILIVDDIYTTGSTIYHIYSLLEKAGCQKLKSISIAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1023293 DQN33_RS07360 WP_111673405.1 1488979..1489653(-) (comFC/cflB) [Streptococcus uberis strain NCTC4674]
ATGGACAATAGCTGTCTTATTTGTAACCAATGGATAGAACAAGAACTAAGTCTTTTGGAAATCTTATGTTTTCAACAAAA
GGAATTCTTACTTTGTAAGGATTGTGAATGGGCACTACAACCAATCAAATCACAATTTTGTCCAAGATGCTATAAAGTTG
GTGAAGAATCAATTTGTCATGATTGTCTAAAATGGTCTGAAAAAGGTTACCAAGTAAACCATAGAGCTTTGTATGTTTAT
AATGGCAAAATGAAAGACTATTTCGCAAAATACAAGTTTCAAGGTGATTATATCTTGAAGTCAGTCTTTTCCAAAAAAAT
AGCTAAAATAATCAAGAATGACTATAAAGGTTATGTACTTGTTCCAGTTCCAATTAGTCAAAAGAGATACTATGAAAGAG
GGTATAATCAGGTAGAGGAAATCTTAAAGTCTGAAAAACTTACTTACACCGATCTTGTATTAAAAAGAGAAGGGAAAAGA
CACTCACACCTCAATAAACGTGAAAGAGAACAAAGCGAAAATCCCTTCTACTTAAATAAAATTGAGAAAACAATTCCAGA
AAACATTTTAATTGTTGACGATATCTATACTACAGGTAGTACGATTTATCATATTTATTCCTTATTAGAAAAAGCTGGTT
GTCAAAAGTTAAAAAGCATCAGTATAGCACGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae Rx1

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae D39

40.455

98.214

0.397
  comFC/cflB Streptococcus pneumoniae R6

40.455

98.214

0.397
  comFC/cflB Streptococcus mitis NCTC 12261

40

98.214

0.393
  comFC/cflB Streptococcus mitis SK321

39.545

98.214

0.388

Multiple sequence alignment