Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB2M35_RS22210 Genome accession   NZ_CP161902
Coordinates   4174245..4174763 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain DYJ22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4169245..4179763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS22180 (AB2M35_22180) yyaJ 4169755..4171110 (+) 1356 WP_014481501.1 MFS transporter -
  AB2M35_RS22185 (AB2M35_22185) maa 4171144..4171698 (-) 555 WP_069837908.1 sugar O-acetyltransferase -
  AB2M35_RS22190 (AB2M35_22190) yyaH 4171714..4172094 (-) 381 WP_069837909.1 VOC family protein -
  AB2M35_RS22195 (AB2M35_22195) ccpB 4172150..4173080 (-) 931 Protein_4316 transcriptional regulator CcpB -
  AB2M35_RS22200 (AB2M35_22200) xth 4173139..4173897 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  AB2M35_RS22205 (AB2M35_22205) rpsR 4173962..4174201 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  AB2M35_RS22210 (AB2M35_22210) ssbA 4174245..4174763 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB2M35_RS22215 (AB2M35_22215) rpsF 4174804..4175091 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  AB2M35_RS22220 (AB2M35_22220) ychF 4175202..4176302 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AB2M35_RS22225 (AB2M35_22225) yyaE 4176429..4178432 (-) 2004 WP_069837910.1 molybdopterin-dependent oxidoreductase -
  AB2M35_RS22230 (AB2M35_22230) yyzM 4178483..4178689 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1023032 AB2M35_RS22210 WP_003219228.1 4174245..4174763(-) (ssbA) [Bacillus subtilis strain DYJ22]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1023032 AB2M35_RS22210 WP_003219228.1 4174245..4174763(-) (ssbA) [Bacillus subtilis strain DYJ22]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment