Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQM95_RS06625 Genome accession   NZ_LS483397
Coordinates   1276807..1277751 (-) Length   314 a.a.
NCBI ID   WP_037591812.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271807..1282751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS06605 (NCTC3858_01347) - 1272088..1272795 (-) 708 WP_037591818.1 O-methyltransferase -
  DQM95_RS06610 (NCTC3858_01348) - 1272935..1274164 (-) 1230 WP_037591817.1 OFA family MFS transporter -
  DQM95_RS06615 (NCTC3858_01349) - 1274289..1274930 (-) 642 WP_037591816.1 HAD family phosphatase -
  DQM95_RS06620 (NCTC3858_01350) pepF 1274982..1276790 (-) 1809 WP_037591814.1 oligoendopeptidase F Regulator
  DQM95_RS06625 (NCTC3858_01351) coiA 1276807..1277751 (-) 945 WP_037591812.1 competence protein CoiA Machinery gene
  DQM95_RS06630 (NCTC3858_01352) - 1277827..1278972 (-) 1146 WP_037591810.1 MFS transporter -
  DQM95_RS06635 - 1279058..1279773 (-) 716 Protein_1249 pseudouridine synthase -
  DQM95_RS06640 (NCTC3858_01355) nagB 1279839..1280543 (-) 705 WP_037591809.1 glucosamine-6-phosphate deaminase -
  DQM95_RS06645 (NCTC3858_01356) queA 1280724..1281752 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 37569.09 Da        Isoelectric Point: 9.1479

>NTDB_id=1022802 DQM95_RS06625 WP_037591812.1 1276807..1277751(-) (coiA) [Streptococcus uberis strain NCTC3858]
MLTALDSEGKLCHLLGEFPLSKDYFCPGCGQSLCLKKGKVMRPHFAHKHLRDCHFFSENESVEHLQLKATLYKIISKTED
VRIEKVFPEFGQIADLCINHKLILEVQCSPLPIDRLIERTNAYHREGYMVYWLLGKKLWLRKKLNHLQKQFLAFSWFIGF
YLWELDLEKEELRLHYMIHQNLFGKLCYLTKRCSFKDNIMAFLRLPFQKSCASKMTLHMDQEVIGKIKKSLCRRDKSWLK
RQEDAYLQGKNLLTEPLETFYPQIRPPFSDIPFCQIHENLQSYYESFDRFYQKMKDKKVQTLYPPFLYVKIKEN

Nucleotide


Download         Length: 945 bp        

>NTDB_id=1022802 DQM95_RS06625 WP_037591812.1 1276807..1277751(-) (coiA) [Streptococcus uberis strain NCTC3858]
GTGTTAACAGCATTGGATTCTGAGGGGAAATTGTGTCATCTTTTAGGTGAGTTTCCTCTTTCAAAGGATTATTTTTGCCC
AGGGTGTGGGCAAAGCTTATGTCTAAAAAAGGGAAAAGTCATGCGTCCTCACTTTGCTCATAAGCATTTAAGGGATTGTC
ACTTCTTTTCTGAAAATGAATCGGTAGAGCATTTACAATTAAAAGCAACTTTATACAAGATCATCAGCAAAACAGAAGAC
GTCCGTATTGAAAAGGTTTTTCCTGAGTTTGGACAGATAGCTGATTTATGTATTAATCATAAATTAATTTTAGAAGTTCA
ATGTAGCCCTTTACCCATCGACCGCTTAATTGAGAGAACAAACGCATACCATCGTGAAGGGTATATGGTTTATTGGCTTT
TAGGTAAAAAACTTTGGTTAAGAAAGAAATTAAATCACCTGCAAAAACAGTTTTTAGCCTTTTCTTGGTTTATCGGTTTT
TATCTTTGGGAACTAGATTTAGAAAAAGAAGAACTCCGACTACACTATATGATTCATCAAAATTTATTTGGAAAGCTGTG
CTATTTAACCAAAAGATGTTCCTTTAAGGACAATATTATGGCTTTTTTAAGACTCCCTTTTCAAAAAAGCTGTGCTTCAA
AAATGACTCTTCACATGGATCAAGAGGTGATAGGTAAAATCAAAAAATCTTTATGTCGTAGAGACAAATCTTGGCTTAAG
CGACAAGAAGATGCTTATCTTCAAGGTAAGAATTTATTAACAGAACCTCTAGAAACCTTTTATCCTCAAATTAGACCACC
CTTTTCCGACATTCCATTTTGTCAGATTCATGAAAATTTACAGTCATATTATGAATCTTTTGATCGTTTTTATCAGAAAA
TGAAAGATAAAAAAGTGCAAACGCTTTATCCTCCATTCCTTTATGTTAAAATAAAAGAGAACTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.278

98.408

0.455
  coiA Streptococcus pneumoniae TIGR4

45.307

98.408

0.446
  coiA Streptococcus pneumoniae Rx1

45.307

98.408

0.446
  coiA Streptococcus pneumoniae D39

45.307

98.408

0.446
  coiA Streptococcus pneumoniae R6

45.307

98.408

0.446
  coiA Lactococcus lactis subsp. cremoris KW2

38.08

100

0.392