Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   DQM95_RS03925 Genome accession   NZ_LS483397
Coordinates   709697..713359 (+) Length   1220 a.a.
NCBI ID   WP_111685946.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 704697..718359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS03915 (NCTC3858_00801) - 705360..706274 (-) 915 WP_012658202.1 neutral zinc metallopeptidase -
  DQM95_RS03920 (NCTC3858_00802) rexB 706447..709707 (+) 3261 WP_037592300.1 ATP-dependent nuclease subunit B Machinery gene
  DQM95_RS03925 (NCTC3858_00803) rexA 709697..713359 (+) 3663 WP_111685946.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DQM95_RS03930 (NCTC3858_00804) - 713477..714607 (+) 1131 WP_037592299.1 aminotransferase -
  DQM95_RS03935 (NCTC3858_00805) - 714667..715479 (+) 813 WP_037592298.1 transporter substrate-binding domain-containing protein -
  DQM95_RS03940 (NCTC3858_00806) rpsU 715606..715782 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  DQM95_RS03945 (NCTC3858_00807) mscL 715882..716256 (-) 375 WP_037592297.1 large conductance mechanosensitive channel protein MscL -
  DQM95_RS03950 (NCTC3858_00808) dnaG 716384..718195 (+) 1812 WP_111685947.1 DNA primase -

Sequence

Protein


Download         Length: 1220 a.a.        Molecular weight: 140798.14 Da        Isoelectric Point: 5.3068

>NTDB_id=1022784 DQM95_RS03925 WP_111685946.1 709697..713359(+) (rexA) [Streptococcus uberis strain NCTC3858]
MRFEPFLNQEEIRQLQEFEKNGSKAQKRTPEQIEAIYTNGQNILVSASAGSGKTFVMVERIIDKVLRGISIENMFISTFT
VKAANELKERLEKKLREGILMTDDPEMKAYLNDQMQAIALADIGTMDAFTQKLLNEHGYLLGIPPKFRIMQDKSEQELLK
NEIYKSLFENYMASDHSQVFLRLVKNFSGNRKDSKSFRDQVYKIYQFSQSTENPKQWLENNFLLAANQYQDYDDLPDETI
DALLQSMKETAISLRDLTDLEEYGQMTKAGKPAAKYVKHLTMIEALNDWSMHFDSYYGKSQIGKLAQDLSALLPSGTDVT
VAGQKYPIFKDIQSKISQFRHLATLLTYQPETLPLLLELQSFVIDFTEAYLEAKKSENAFEFTDITHFAIEILQNQEAIR
KVYQSKYHEVMVDEYQDNNHMQECLLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQENPENGKLILLKENFR
SQSEVIDATNAVFSHLMDEAVGDILYDDNHYLKAGSDKQKVRYPENNCQVLIYDTDQKDNGEDEHDKEDERRTEGQETLS
PGEVNILVKEIIRLHQEEAVPFSDITLLVSSRTRNDLLFKTFNQYDIPLVSDGGQENYLKSVEVMVMLDTLRSINNPLND
YALVALMRSPMFAFNEDQLARIALQDSQEGKVEHFYEKVLNSLSHHGQHAELITQELHDQLKLFDQSLNAWRDYSRTHSL
YELIWKIYNDRFYFDFVGLSPKAEQAQANLYALALRANQFEKTTFKGLTRFISMIDNILNTENDLADVDLAKPKEAVNVM
TIHKSKGLEFKYVFILNCDKKFSMADIHSPLILSRQKGVGIKFLADVKKELNATHLPSVKLYLETLPYQINKKELKIATL
SEQMRLLYVAMTRAEKKLYLIGKGSQEKLSQKFDTKREGQHLPKALRESITNFQDWLLAIHQVFDSKDLSFTIDFVTDNE
LGPESIGSISHQSNIMIDDLRDNRQSDSIARAIDMLNNVNQLNQKYEAAINLPTVRTPSQLKKFYQPIMDIDGVEILADK
SQTPTTFELPQFSKAKQVTSSQVGSALHELMQRIKITSHVTEKDIQQASQLVDAEAEVMAKIDLHKVKSFFESTELGRLI
QVHHDKLYREAPFAMLKTDPQSQEKFVIRGIVDGFLLFDDKIVLFDYKTDHYKTSLEMKLKYQEQMALYAESLRKAYDIS
TIESFLILMGKETVEIVECS

Nucleotide


Download         Length: 3663 bp        

>NTDB_id=1022784 DQM95_RS03925 WP_111685946.1 709697..713359(+) (rexA) [Streptococcus uberis strain NCTC3858]
ATGAGATTTGAACCATTTTTAAATCAGGAAGAGATAAGGCAATTACAAGAGTTTGAAAAAAATGGCAGTAAAGCACAAAA
AAGAACACCAGAACAAATTGAAGCCATCTACACCAATGGACAAAATATCTTAGTATCTGCTTCGGCAGGATCTGGTAAAA
CCTTTGTCATGGTTGAACGGATTATAGATAAAGTGTTACGTGGTATCTCTATCGAGAACATGTTTATATCTACTTTTACA
GTAAAAGCAGCCAATGAACTCAAGGAAAGACTTGAAAAAAAATTAAGAGAAGGCATTCTAATGACGGATGACCCTGAAAT
GAAAGCCTATCTTAATGATCAAATGCAGGCTATTGCCTTAGCTGATATTGGTACAATGGATGCTTTTACTCAAAAGCTGT
TAAATGAACATGGTTACTTGTTAGGGATTCCTCCTAAGTTTCGAATCATGCAGGATAAATCTGAGCAAGAGTTGCTCAAA
AATGAAATTTATAAATCCTTATTTGAAAACTACATGGCATCTGACCATTCACAGGTATTTTTAAGATTAGTCAAAAACTT
TTCTGGTAACCGAAAAGATTCCAAAAGTTTTCGAGATCAGGTCTATAAAATTTATCAATTTAGCCAATCAACGGAGAATC
CCAAACAGTGGTTGGAAAATAATTTTTTATTAGCCGCAAACCAGTATCAAGATTATGATGATTTACCTGATGAAACCATT
GACGCCTTGCTACAAAGCATGAAAGAAACAGCTATTTCTTTAAGAGATCTTACAGATTTAGAAGAATACGGGCAAATGAC
GAAAGCCGGGAAACCAGCCGCCAAATATGTCAAGCATTTGACTATGATTGAGGCATTAAATGATTGGTCAATGCATTTTG
ATAGTTATTACGGAAAAAGTCAGATTGGAAAATTAGCACAGGATTTGTCAGCTCTCTTACCTTCAGGAACTGACGTCACA
GTTGCTGGTCAAAAATACCCTATTTTTAAAGACATTCAGTCTAAAATAAGCCAATTTCGGCATTTAGCAACCCTCTTAAC
TTATCAACCTGAGACCCTTCCTCTTTTATTAGAATTGCAATCTTTTGTCATCGATTTTACAGAAGCTTACTTGGAGGCGA
AAAAATCTGAAAATGCCTTTGAATTTACAGATATAACGCATTTTGCTATTGAAATTCTTCAAAATCAAGAAGCAATCAGA
AAGGTATATCAAAGCAAATACCATGAAGTCATGGTAGATGAGTATCAGGATAATAACCATATGCAAGAATGTCTCTTGGA
ATTACTGTCAAATGGACATAATCGTTTTATGGTCGGAGATATCAAGCAGTCTATTTACCGGTTTAGGCAAGCCGACCCAC
AGATTTTTAATCAAAAATTTAAAGACTATCAAGAGAATCCTGAAAATGGCAAACTGATATTACTGAAAGAAAACTTCCGT
AGCCAATCTGAAGTAATAGATGCAACAAATGCTGTTTTTTCTCATTTAATGGATGAAGCCGTAGGCGATATCTTGTATGA
TGACAACCATTATTTAAAAGCTGGAAGTGACAAGCAAAAGGTAAGGTACCCAGAGAATAATTGTCAAGTACTTATCTATG
ATACTGATCAAAAAGATAACGGAGAAGATGAACACGACAAAGAGGATGAAAGGCGTACTGAAGGGCAAGAAACTCTTTCA
CCTGGGGAAGTCAATATCTTGGTCAAAGAGATTATTCGACTCCACCAAGAAGAAGCTGTACCTTTTTCTGATATTACCTT
ATTGGTTTCATCGCGAACACGCAATGACTTGCTTTTTAAAACATTTAATCAGTATGACATCCCATTGGTTTCAGATGGAG
GTCAGGAAAACTATTTAAAATCGGTTGAAGTAATGGTCATGCTCGATACCCTTCGATCAATCAATAATCCTTTAAACGAT
TATGCCTTGGTGGCCCTTATGCGTTCACCAATGTTTGCATTTAACGAGGATCAATTAGCTCGCATTGCATTACAAGATAG
TCAAGAGGGGAAAGTAGAGCATTTTTATGAGAAAGTTCTCAATAGTTTGTCACATCATGGACAGCATGCCGAACTGATTA
CTCAAGAACTACATGATCAGTTGAAACTATTTGACCAATCCCTCAATGCTTGGAGAGATTATTCCAGAACGCATTCTTTA
TATGAATTGATTTGGAAGATTTATAATGATCGTTTCTATTTTGATTTTGTCGGCTTAAGTCCCAAAGCTGAGCAAGCCCA
AGCTAATTTATATGCACTAGCTTTAAGGGCAAATCAGTTTGAAAAAACGACTTTTAAAGGGTTAACTCGGTTTATTTCAA
TGATTGATAATATCTTGAATACTGAAAATGACCTAGCAGATGTTGATTTAGCTAAGCCAAAAGAGGCTGTCAATGTTATG
ACGATTCATAAATCAAAAGGTCTTGAATTTAAATATGTTTTTATTTTAAACTGTGATAAAAAGTTCAGCATGGCAGACAT
TCATTCTCCATTGATTTTAAGTAGACAAAAGGGGGTAGGTATTAAATTTTTAGCGGATGTTAAAAAAGAACTAAATGCGA
CACATTTGCCAAGTGTTAAACTGTATTTAGAAACCTTACCTTATCAAATCAATAAAAAGGAATTAAAAATAGCAACACTT
TCTGAGCAAATGAGACTCTTATATGTTGCAATGACTAGGGCTGAGAAAAAACTTTATTTAATCGGGAAAGGTAGCCAAGA
AAAATTAAGTCAGAAATTTGACACAAAACGAGAAGGACAACACTTACCTAAGGCATTACGTGAAAGTATCACCAACTTCC
AAGATTGGTTACTAGCCATCCACCAAGTTTTTGACTCAAAAGACTTATCATTTACCATTGATTTCGTAACAGATAATGAG
TTAGGACCTGAATCGATAGGGTCAATTTCACATCAATCAAATATCATGATTGATGACCTAAGAGATAATAGGCAGTCTGA
TTCCATTGCGCGTGCGATTGATATGCTCAATAATGTTAACCAATTAAACCAAAAGTATGAAGCAGCCATAAATCTTCCAA
CTGTCAGAACACCTAGTCAATTGAAGAAATTTTACCAACCAATAATGGATATAGACGGTGTTGAGATTTTGGCTGACAAG
AGTCAGACTCCAACAACCTTTGAATTACCTCAATTTTCAAAGGCTAAGCAAGTAACATCAAGTCAAGTTGGTTCTGCTCT
ACATGAACTCATGCAACGGATAAAGATTACAAGTCATGTTACCGAAAAAGACATTCAGCAGGCTAGTCAACTGGTTGATG
CTGAAGCAGAGGTGATGGCAAAGATTGATTTACATAAAGTAAAATCCTTCTTCGAATCAACAGAACTGGGACGTTTAATA
CAAGTTCACCACGATAAGCTTTATCGTGAAGCACCATTTGCTATGTTAAAAACTGATCCACAAAGTCAGGAAAAATTTGT
AATACGTGGTATTGTTGATGGCTTTTTACTCTTTGATGATAAGATTGTTTTATTTGACTATAAGACGGATCACTATAAAA
CGTCTTTAGAAATGAAACTAAAATATCAAGAACAAATGGCTTTATATGCAGAATCCTTGCGAAAAGCTTATGATATATCG
ACAATTGAAAGCTTTTTAATTTTAATGGGTAAAGAAACGGTAGAAATCGTTGAATGTTCTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1196)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-901)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

49.838

100

0.506

Multiple sequence alignment