Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU640_RS12300 Genome accession   NZ_CP161854
Coordinates   2719222..2719755 (-) Length   177 a.a.
NCBI ID   WP_339444157.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2714222..2724755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS12280 (ABU640_12280) - 2714677..2714994 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  ABU640_RS12285 (ABU640_12285) gspM 2714987..2715637 (-) 651 WP_000835150.1 type II secretion system protein GspM -
  ABU640_RS12290 (ABU640_12290) - 2715634..2717073 (-) 1440 WP_033930069.1 PilN domain-containing protein -
  ABU640_RS12295 (ABU640_12295) csrD 2717086..2719098 (-) 2013 WP_033930068.1 RNase E specificity factor CsrD -
  ABU640_RS12300 (ABU640_12300) ssb 2719222..2719755 (-) 534 WP_339444157.1 single-stranded DNA-binding protein Machinery gene
  ABU640_RS12305 (ABU640_12305) qstR 2720047..2720691 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABU640_RS12310 (ABU640_12310) galU 2720864..2721736 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABU640_RS12315 (ABU640_12315) uvrA 2721892..2724714 (+) 2823 WP_032480655.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19662.86 Da        Isoelectric Point: 5.7626

>NTDB_id=1022784 ABU640_RS12300 WP_339444157.1 2719222..2719755(-) (ssb) [Vibrio cholerae strain C3616]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVSAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1022784 ABU640_RS12300 WP_339444157.1 2719222..2719755(-) (ssb) [Vibrio cholerae strain C3616]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTTCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

50.265

100

0.537
  ssb Neisseria meningitidis MC58

49.153

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.486

Multiple sequence alignment