Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQM95_RS01035 Genome accession   NZ_LS483397
Coordinates   161298..161735 (+) Length   145 a.a.
NCBI ID   WP_111685890.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 156298..166735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS01005 (NCTC3858_00204) - 156325..158334 (+) 2010 WP_037592924.1 DUF859 domain-containing protein -
  DQM95_RS01010 (NCTC3858_00205) - 158347..158745 (+) 399 WP_037592923.1 DUF1366 domain-containing protein -
  DQM95_RS10030 (NCTC3858_00206) - 158808..158966 (+) 159 WP_170123116.1 hypothetical protein -
  DQM95_RS01015 (NCTC3858_00207) - 158979..159449 (+) 471 WP_111685889.1 phage holin family protein -
  DQM95_RS10190 (NCTC3858_00208) - 159451..160164 (+) 714 WP_037592922.1 peptidoglycan amidohydrolase family protein -
  DQM95_RS01030 (NCTC3858_00211) comGC 161081..161347 (+) 267 WP_037592920.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM95_RS01035 (NCTC3858_00212) comGD 161298..161735 (+) 438 WP_111685890.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM95_RS01040 (NCTC3858_00213) comGE 161707..162006 (+) 300 WP_111685891.1 competence type IV pilus minor pilin ComGE -
  DQM95_RS01045 (NCTC3858_00214) comGF/cglF 161966..162421 (+) 456 WP_037592918.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM95_RS01050 (NCTC3858_00215) comGG 162399..162758 (+) 360 WP_037592916.1 competence type IV pilus minor pilin ComGG -
  DQM95_RS01055 (NCTC3858_00216) comGH 162803..163759 (+) 957 WP_037592915.1 class I SAM-dependent methyltransferase Machinery gene
  DQM95_RS01060 (NCTC3858_00217) - 163815..165005 (+) 1191 WP_037592914.1 acetate kinase -
  DQM95_RS01065 (NCTC3858_00218) - 165123..165326 (+) 204 WP_012657682.1 helix-turn-helix transcriptional regulator -
  DQM95_RS01070 - 165328..165780 (+) 453 WP_037592912.1 hypothetical protein -
  DQM95_RS01075 (NCTC3858_00220) - 165789..166442 (+) 654 WP_012657684.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16900.51 Da        Isoelectric Point: 9.8211

>NTDB_id=1022754 DQM95_RS01035 WP_111685890.1 161298..161735(+) (comGD) [Streptococcus uberis strain NCTC3858]
MTIIKNIMTRVQYYQSKAFTLAESLLCLAVTTFTILLLSSSLAGVYESVERELFFISFEHFYRHCQKMSVLKQEESALHF
TAHRITYGQRELVIPDHIRLLNQGTIPFNKTGGSHSLARIEWQTPREKMTYQLNLGSGNYQKRRH

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1022754 DQM95_RS01035 WP_111685890.1 161298..161735(+) (comGD) [Streptococcus uberis strain NCTC3858]
ATGACTATTATCAAAAACATAATGACGAGAGTCCAATACTATCAAAGTAAAGCCTTCACCCTTGCGGAGAGTCTGCTCTG
TCTGGCAGTGACGACCTTTACCATTCTGTTGCTAAGTAGCTCTCTGGCGGGTGTTTATGAAAGTGTGGAAAGAGAGTTGT
TTTTCATTTCCTTTGAACATTTTTATCGCCATTGTCAAAAAATGAGTGTTTTAAAACAAGAAGAAAGTGCTTTGCACTTT
ACAGCACATCGTATCACATATGGTCAGCGAGAATTAGTGATTCCAGATCATATTCGATTGTTAAATCAAGGGACTATCCC
TTTTAACAAAACAGGTGGTAGTCATTCCTTAGCAAGAATTGAGTGGCAAACACCAAGGGAGAAAATGACATATCAGCTAA
ACTTGGGGAGTGGGAATTATCAAAAACGAAGACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.882

87.586

0.393
  comGD Streptococcus mutans UA159

44.882

87.586

0.393

Multiple sequence alignment